ViewGene

Locus Name:
GeneID:
Location:

GeneID:2670
TrivialName: PA14_62300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62300
PAO1 Ortholog Locus:PA4708
Sequence Length:894
Protein Length:297
Start: 5559894
Stop: 5559001
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08094.1|AE004884_12 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 296/297 (99%), Positives = 296/297 (99%)
Sequence:
ATGCGTATCGATCGACTATTCAACGGGTTGGCGCTGGGCATCCTGCTCGGCACCGGCATGGCCCAGGCCGCC
GAGCTGCCGCAACGCTGGGTGAGCGCGGGCGGCTCGCTGAGCGAATGGGTGGTGGCGCTGGGCGGCGAGAGC
AAGCTGGTCGGGGTGGACACCACCAGCCAGCATCCGCAGGCGCTGAAACAGTTGCCGAGCGTCGGCTACCAG
CGCCAACTGGCTGCCGAGGGCGTGCTGGCGTTGCGTCCGGATATCCTCATCGGCACCGAGGAAATGGGGCCT
CCGCCGGTACTCAAGCAGCTCGAAGGCGCCGGCGTGCGGGTCGAGACCCTCTCCGCCAAGCCGGATCTGGAG
GCACTGGAAAGCAACCTGAAGAAGCTCGGCGACTGGCTCGGCGTGCCCCAGCGCGCCGAGGCCGCCGAACTT
GACTATCGTCAGCGGCTGCGGCGCCAGGCGGACTGGATCGCGGCCGCGCAGAAGAGCCAGCCGGCCCCGGGC
GTCCTGCTGGTGATCGGCAACGCCGGCGGTCAGTTGCTGGTAGCCGGGCGCAATACCGGCGGCGATTGGGTC
CTGAACCGGGCCGGAGCACGCAACCTGGCTACCCATGAGGGTTACAAGCCGATCTCGGTGGAAGCCCTGGCC
GCGCTCGATCCGGCCGCGGTGGTGATCGCCGACCGCAGCCTCGAAGGTGATGCGGCGCGTGCCGCGCTGCTC
AAGCAGAACCCCGGCCTCGCCGCGACCCGCGCGGCGCGTGACGGACGTCTGCTGGTGCTGGACCCGACGCTC
CTGGTGGGCGGCCTCGGTCCGCGCCTGCCGGATGGCCTGGCGGCTCTCTCCGCAGCCTTTTATCCTTCCGCG
AAACCGCTGAGTACGGAAGCCGCCCATTGA
Translation:
MRIDRLFNGLALGILLGTGMAQAAELPQRWVSAGGSLSEWVVALGGESKLVGVDTTSQHPQALKQLPSVGYQ
RQLAAEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVPQRAEAAEL
DYRQRLRRQADWIAAAQKSQPAPGVLLVIGNAGGQLLVAGRNTGGDWVLNRAGARNLATHEGYKPISVEALA
ALDPAAVVIADRSLEGDAARAALLKQNPGLAATRAARDGRLLVLDPTLLVGGLGPRLPDGLAALSAAFYPSA
KPLSTEAAH*
AnnotationID:2678GeneID:2670
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:41
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic binding protein
Cell Localization:()
Synonyms:phuT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative heme/hemin ABC transporter, periplasmic heme/hemin-binding protein
Functional Category Confidence Code:5
COGs:COG4558,cd01149
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70262.1|AE016666_6 (AE016791) heme/hemin ABC transporter, periplasmic
           heme/hemin-binding protein [Pseudomonas putida KT2440]
          Length = 294

 Score =  347 bits (889), Expect = 6e-95
 Identities = 179/294 (60%), Positives = 220/294 (74%), Gaps = 1/294 (0%)

>gb|AAN82749.1|AE016768_167 (AE016768) Putative Periplasmic binding protein [Escherichia coli
           CFT073]
          Length = 330

 Score =  165 bits (417), Expect = 3e-40
 Identities = 101/274 (36%), Positives = 158/274 (57%), Gaps = 10/274 (3%)
Structural Features:
COG4558, ChuT, ABC-type hemin transport system, periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 300 residues,  95.3% aligned
Score =  276 bits (707), Expect = 3e-75
Identities = 121/291 (41%), Positives = 172/291 (59%), Gaps = 7/291 (2%)

cd01149, HutB, Hemin binding protein HutB. 
CD-Length = 235 residues, 100.0% aligned
Score =  239 bits (612), Expect = 2e-64
Genomic Context:
Comment:
ReferenceID:5343
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22488
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37629
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2670_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2670

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4388 PA4708_tr translation of PA4708 297 99.66 99.66 0 1486.0
127979 gb|AAG08094.1|AE004884_12 (AE004884) hypothetical protein PA4708 [Pseudomonas aeruginosa PAO1] 297 99.66 99.66 0 1486.0
127980 gb|AAC13287.1| (AF055999) periplasmic binding protein [Pseudomonas aeruginosa] 297 99.32 99.32 0 1481.0
127981 gb|AAN70262.1|AE016666_6 (AE016791) heme/hemin ABC transporter, periplasmic heme/hemin-binding protein [Pseudomonas putida KT2440] 298 60.06 73.82 5 891.0
127982 emb|CAE44677.1| (BX640412) putative hemin binding protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 310 37.09 52.25 34 423.0
GC ORFID: 45672How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4708Glimmer Score:
Start: 4823574Stop: 4822681
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4708 translation of PA4708Homolog Bit Score 577.0
Other Homologs: t_PA4708 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTATCGATCGACTATTCAACGGGTTGGCGCTGGGCATCCTGCTCGGCACCGGCATGGCCCAGGCCGCC
GAGCTGCCGCAACGCTGGGTGAGCGCGGGCGGCTCGCTGAGCGAATGGGTGGTGGCGCTGGGCGGCGAGAGC
AAGCTGGTCGGGGTGGACACCACCAGCCAGCATCCGCAGGCGCTGAAACAGTTGCCGAGCGTCGGCTACCAG
CGCCAACTGGCTGCCGAGGGCGTGCTGGCGTTGCGTCCGGATATCCTCATCGGCACCGAGGAAATGGGGCCT
CCGCCGGTACTCAAGCAGCTCGAAGGCGCCGGCGTGCGGGTCGAGACCCTCTCCGCCAAGCCGGATCTGGAG
GCACTGGAAAGCAACCTGAAGAAGCTCGGCGACTGGCTCGGCGTGCCCCAGCGCGCCGAGGCCGCCGAACTT
GACTATCGTCAGCGGCTGCGGCGCCAGGCGGACTGGATCGCGGCCGCGCAGAAGAGCCAGCCGGCCCCGGGC
GTCCTGCTGGTGATCGGCAACGCCGGCGGTCAGTTGCTGGTAGCCGGGCGCAATACCGGCGGCGATTGGGTC
CTGAACCGGGCCGGAGCACGCAACCTGGCTACCCATGAGGGTTACAAGCCGATCTCGGTGGAAGCCCTGGCC
GCGCTCGATCCGGCCGCGGTGGTGATCGCCGACCGCAGCCTCGAAGGTGATGCGGCGCGTGCCGCGCTGCTC
AAGCAGAACCCCGGCCTCGCCGCGACCCGCGCGGCGCGTGACGGACGTCTGCTGGTGCTGGACCCGACGCTC
CTGGTGGGCGGCCTCGGTCCGCGCCTGCCGGATGGCCTGGCGGCTCTCTCCGCAGCCTTTTATCCTTCCGCG
AAACCGCTGAGTACGGAAGCCGCCCATTGA