ViewGene
Locus Name:
GeneID:
Location:

GeneID:2669
TrivialName: PA14_55860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55860
PAO1 Ortholog Locus:PA4300
Sequence Length:912
Protein Length:303
Start: 4988477
Stop: 4987566
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07688.1|AE004846_5 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/303 (100%), Positives = 303/303 (100%)
Sequence:
ATGCAGGCACAGTGGCTGATTTTCGCGGCGCTCCTGATGGCGGTCGGCGGTGCCTTGTTGCTGTTGCTCCAG
GCGCGCAACGGCAGCCGCGAGCAGCGCCTGATCGAGAGGCGCCTGGGAGCGCTGGCCAACCCTGGCGGCTCG
ACCAGGTGGCTGGCCGGCATGACCGAGCGGATGGACGACAGCTTCTGGGTGCGGCGCCTGCAACTGATGGAC
AGCGAGGCCCGCCAGTTGCTGCAACAGGCCGGCTGGCACGAGAGTCGCTACCGGACCCTGTACCTGATCTCG
GTGTTCCTCACGCCGCTGCTGTTCGTTCTCCTGGTCTTGCTGGTCAAGCTGCTGCGCGCCGAGAGCGAGGCG
TCCTACGCGGTGCCGCTGCTGTTCGCCGCCGGCATCGGTTTCCTCCTGCCCAAGCAGGTGCTCAAGCACTTC
GCCAAGGCGCGCCGGGCGCTGATCGCCGACGAGATGATCCTGTTCGTGCAACTGATCCGCATCCTCTTCGAT
GCCGGCCTGACCGTGGAGCAGACGCTGCGCGTGGTCTGCCTGGAAGGCCGCGGGATCACCCCGCAACTGGCC
CGCGAGCTGGACCTGGCGCTGACCCGTGCCGACAACGGCATCGACCTGGCGGAAGAGCTGGAGGCGCTTGCC
CGGCGCCTGCAGGTGGACCCGCTGAACGACTGCTGCGGCGTGCTACGGCAGATGTTGCGCCAGGGCGGCAGT
GCGCGCAGCACCCTGCTGACGCTCAAGCAACTGTTCGAAGACCGGCGCCTGACCACCTTGCAGGAACGCATC
GGCAAGCTGTCGGCGAAGATGAGCCTGGTGATGATGGTACTGCTGTTCCCGGCGCTGCTGATCGTCCTCGCC
GGTCCGGGCGTCATCGCCATTACCAAGGCCTTGGGAGGACTGGGATGA
Translation:
MQAQWLIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWVRRLQLMD
SEARQLLQQAGWHESRYRTLYLISVFLTPLLFVLLVLLVKLLRAESEASYAVPLLFAAGIGFLLPKQVLKHF
AKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALTRADNGIDLAEELEALA
RRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLA
GPGVIAITKALGGLG*
AnnotationID:2677GeneID:2669
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 08:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4300
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative membrane protein
Functional Category Confidence Code:5
COGs:COG2064
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58284.1| (AE016873) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 294

 Score =  217 bits (553), Expect = 6e-56
 Identities = 125/295 (42%), Positives = 180/295 (61%), Gaps = 4/295 (1%)








 
Structural Features:
COG2064, TadC, Flp pilus assembly protein TadC 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 320 residues,  95.6% aligned
Score = 93.4 bits (231), Expect = 3e-20







   
Genomic Context:






   
Comment:


















    ReferenceID:5341




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22486




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36662




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2669_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2669
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4387
                           PA4300_tr
                           translation of PA4300
                           303
                           99.99
                           99.99
                           0
                           1486.0
     

     
     
127977
                           gb|AAG07688.1|AE004846_5
                           (AE004846) hypothetical protein PA4300 [Pseudomonas aeruginosa PAO1]
                           303
                           99.99
                           99.99
                           0
                           1486.0
     

     
     
127978
                           gb|AAO58284.1|
                           (AE016873) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           314
                           42.67
                           58.91
                           31
                           563.0
     

     






      

          
GC ORFID: 45671How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4300Glimmer Score: 

          
Start: 4252153Stop: 4251242

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4300 translation of PA4300Homolog Bit Score 577.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5764 (ORF: BLASTX 221.0), t_PA4300 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGCACAGTGGCTGATTTTCGCGGCGCTCCTGATGGCGGTCGGCGGTGCCTTGTTGCTGTTGCTCCAG 
GCGCGCAACGGCAGCCGCGAGCAGCGCCTGATCGAGAGGCGCCTGGGAGCGCTGGCCAACCCTGGCGGCTCG 
ACCAGGTGGCTGGCCGGCATGACCGAGCGGATGGACGACAGCTTCTGGGTGCGGCGCCTGCAACTGATGGAC 
AGCGAGGCCCGCCAGTTGCTGCAACAGGCCGGCTGGCACGAGAGTCGCTACCGGACCCTGTACCTGATCTCG 
GTGTTCCTCACGCCGCTGCTGTTCGTTCTCCTGGTCTTGCTGGTCAAGCTGCTGCGCGCCGAGAGCGAGGCG 
TCCTACGCGGTGCCGCTGCTGTTCGCCGCCGGCATCGGTTTCCTCCTGCCCAAGCAGGTGCTCAAGCACTTC 
GCCAAGGCGCGCCGGGCGCTGATCGCCGACGAGATGATCCTGTTCGTGCAACTGATCCGCATCCTCTTCGAT 
GCCGGCCTGACCGTGGAGCAGACGCTGCGCGTGGTCTGCCTGGAAGGCCGCGGGATCACCCCGCAACTGGCC 
CGCGAGCTGGACCTGGCGCTGACCCGTGCCGACAACGGCATCGACCTGGCGGAAGAGCTGGAGGCGCTTGCC 
CGGCGCCTGCAGGTGGACCCGCTGAACGACTGCTGCGGCGTGCTACGGCAGATGTTGCGCCAGGGCGGCAGT 
GCGCGCAGCACCCTGCTGACGCTCAAGCAACTGTTCGAAGACCGGCGCCTGACCACCTTGCAGGAACGCATC 
GGCAAGCTGTCGGCGAAGATGAGCCTGGTGATGATGGTACTGCTGTTCCCGGCGCTGCTGATCGTCCTCGCC 
GGTCCGGGCGTCATCGCCATTACCAAGGCCTTGGGAGGACTGGGATGA