ViewGene
Locus Name:
GeneID:
Location:

GeneID:2668
TrivialName: PA14_12140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12140
PAO1 Ortholog Locus:PA3995
Sequence Length:894
Protein Length:297
Start: 1050291
Stop: 1049398
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07382.1|AE004817_6 (AE004817) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 296/297 (99%), Positives = 296/297 (99%)
Sequence:
ATGGAGCTTGCCGTCCCCACCTCCCAATCCCTGGATATCGTGTTGTTGCGTACCTTTCTCGAAGTGGTCGAC
AGTGGCGGCTTCGCCCTCGCCGCGGACAATCTCGCGCTCACTCCCTCCGCGGTCAGCGGGCATATCAAGCGC
CTGGAACAGACAGCCGGCGTCAGCCTGCTCAGCCGCACCACCCGCCGCCTGGAGCTGACCCAGGCGGGCGAG
ACGCTCTACGCCTATGCCCGCAACATCGTCGAGCTGGAGCGCGAGGCCCGCGCCAGGCTGCACGGCACGCCG
ATCCGCGACCGCCTGCGCATCGGCGCTTCGGAGGACTTCGCCAGCGCCTGGCTGCCACGCGTCCTGCAACGC
TTTCGCCGCTGGCACCCCGAAGCATCCATCGAACTCAAGGTCGGTATCACCACCGACCTGCTCCGCCAGCAG
GCCCAGGGGCGCACCGACGTGGTGTTCGGCAAGCAGTGCCGGCGGGTCGGAGACGACGGCGAACTGCTCTGG
GAGGAACCGCTGGTCTGGGCCGCGGCGACCGCGATCGAGCTGCCCGTGGGCGAACCGCTGCCGCTGGCGCTG
TTCCCCGAACCCTGCGTCTACCGCGAAGCGGCGATTACAGCCCTCGGCGCCGCTGCGCGTCCCTGGCGCCTG
GTGTTCGAGAGCGCCAGCATGGCCGGCTGCCTGTCCGCCGCGCTGGCCGGTTTCGCCGTGACGGTGGTGGCG
CGCAGCCAGATGCGCGAGGGGCTGCGCGAACTGGGCCCGGAACAGGGTTTTCCGACGCTGCCGGAGGCGCGT
TTCTACGCCTTCTCGCGCCAACCCAGCCTGGCGGCCGATGCACTGATCGAGGCGGTGCGGCAGCTCGGCCAG
CGCAGTCGCTTCGTTACCGCACAGGGATGA
Translation:
MELAVPTSQSLDIVLLRTFLEVVDSGGFALAADNLALTPSAVSGHIKRLEQTAGVSLLSRTTRRLELTQAGE
TLYAYARNIVELEREARARLHGTPIRDRLRIGASEDFASAWLPRVLQRFRRWHPEASIELKVGITTDLLRQQ
AQGRTDVVFGKQCRRVGDDGELLWEEPLVWAAATAIELPVGEPLPLALFPEPCVYREAAITALGAAARPWRL
VFESASMAGCLSAALAGFAVTVVARSQMREGLRELGPEQGFPTLPEARFYAFSRQPSLAADALIEAVRQLGQ
RSRFVTAQG*
AnnotationID:2676GeneID:2668
AnnotatorUID: diggins
Modification Date/Time: 2006-01-20 06:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3995
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466,pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC69556.1| (AP005028) putative LysR-family transcriptional regulator
           [Streptomyces avermitilis MA-4680]
          Length = 289

 Score =  180 bits (456), Expect = 1e-44
 Identities = 113/278 (40%), Positives = 151/278 (54%), Gaps = 5/278 (1%)

>gb|AAO56129.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 290

 Score =  156 bits (395), Expect = 1e-37
 Identities = 97/269 (36%), Positives = 147/269 (54%), Gaps = 3/269 (1%)






 
Structural Features:
gnl|CDD|10453 COG0583, LysR, Transcriptional regulator [Transcription]
Length = 297
Score =  119 bits (299), Expect = 7e-28
Identities = 99/297 (33%), Positives = 128/297 (43%), Gaps = 18/297 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5339




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22484




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2668
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4386
                           PA3995_tr
                           translation of PA3995
                           297
                           99.66
                           99.66
                           0
                           1488.0
     

     
     
127975
                           gb|AAG07382.1|AE004817_6
                           (AE004817) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           297
                           99.66
                           99.66
                           0
                           1488.0
     

     
     
127976
                           dbj|BAC69556.1|
                           (AP005028) putative LysR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
                           304
                           38.48
                           50.98
                           22
                           456.0
     

     






      

          
GC ORFID: 45670How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3995Glimmer Score: 

          
Start: 3903647Stop: 3904540

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3995 translation of PA3995Homolog Bit Score 577.0

          
Other Homologs:  t_PA3995 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCTTGCCGTCCCCACCTCCCAATCCCTGGATATCGTGTTGTTGCGTACCTTTCTCGAAGTGGTCGAC 
AGTGGCGGCTTCGCCCTCGCCGCGGACAATCTCGCGCTCACTCCCTCCGCGGTCAGCGGGCATATCAAGCGC 
CTGGAACAGACAGCCGGCGTCAGCCTGCTCAGCCGCACCACCCGCCGCCTGGAGCTGACCCAGGCGGGCGAG 
ACGCTCTACGCCTATGCCCGCAACATCGTCGAGCTGGAGCGCGAGGCCCGCGCCAGGCTGCACGGCACGCCG 
ATCCGCGACCGCCTGCGCATCGGCGCTTCGGAGGACTTCGCCAGCGCCTGGCTGCCACGCGTCCTGCAACGC 
TTTCGCCGCTGGCACCCCGAAGCATCCATCGAACTCAAGGTCGGTATCACCACCGACCTGCTCCGCCAGCAG 
GCCCAGGGGCGCACCGACGTGGTGTTCGGCAAGCAGTGCCGGCGGGTCGGAGACGACGGCGAACTGCTCTGG 
GAGGAACCGCTGGTCTGGGCCGCGGCGACCGCGATCGAGCTGCCCGTGGGCGAACCGCTGCCGCTGGCGCTG 
TTCCCCGAACCCTGCGTCTACCGCGAAGCGGCGATTACAGCCCTCGGCGCCGCTGCGCGTCCCTGGCGCCTG 
GTGTTCGAGAGCGCCAGCATGGCCGGCTGCCTGTCCGCCGCGCTGGCCGGTTTCGCCGTGACGGTGGTGGCG 
CGCAGCCAGATGCGCGAGGGGCTGCGCGAACTGGGCCCGGAACAGGGTTTTCCGACGCTGCCGGAGGCGCGT 
TTCTACGCCTTCTCGCGCCAACCCAGCCTGGCGGCCGATGCACTGATCGAGGCGGTGCGGCAGCTCGGCCAG 
CGCAGTCGCTTCGTTACCGCACAGGGATGA