ViewGene
Locus Name:
GeneID:
Location:

GeneID:2667
TrivialName: PA14_15240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15240
PAO1 Ortholog Locus:PA3776
Sequence Length:909
Protein Length:302
Start: 1292204
Stop: 1291296
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07163.1|AE004796_8 (AE004796) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 300/302 (99%), Positives = 300/302 (99%)
Sequence:
ATGATCTCTTTGCGGCAACTCCATTACTTCGTCGAAATCGTCGAGTCCGGCGGCTTCAGCCGTGCCGCCGAA
CGCCTGTTCGTCGCCCAGTCGGCGCTCAGCCGGCAGGTGCGCGAACTGGAGGACAGCATCGGCACCCCACTG
CTCCGCCGCGGTCCGCGCCAGGTCGAGCTGACGCCGGCCGGTCGCGCCTTCCTGCCACGCGCGCAGCGCCTG
CTCGGCGACCTGGAGGCCGCCCGGCGCCTGGCTCGCGAGGTCGGTGAAGGCGGCCATGGCCTGCTGCGCCTG
GGGCACTCCAGCTCGGTGCCGCTGGTGGGCGGCCTGCAAGCGGCGCTGCGCGGCTACCTCGCGGCGCAGAGC
GGCGTCCGCCTGGAACTGACCCAGCAATCCTCCGAGCAGCAACTCGCCGATCTCGCCGAAGGACGCCTGGAC
CTTGGCCTGCTGCGCCTGCCGGTGCTGCGCCAGCATCCCCGGCTGCACCTGCGCGCCCTGTACCGCGAGCCG
TTGCTCCTGGCTCTCGCCGCCGACCATCCGCTGGCCCGCCGTGAAGCCCCCGTGGCCCTGGCCGCCCTGGCC
GGAGAAACCTTCGTCTCCATTCCCCACCTGCAACGCGGCGGCCTCAGCTATCGCGCCGCCGAACTCTGCCTC
GGCGCCGGTTTCTACCCACGCCCGGCGCGCGCGCTGTCGCGCAAGACCAGCCAGTTGCAACTGATCGAGGCC
GGCTTCGGCGTCGCCCTGGTGCCCGCCTCGATGCGCGCCATCGCACCGCCCGCCGTGCGCTTCATGTCTCTG
GCCGAGGCCGAGGCATACAGCGAGGTGGCGCTGGCCTGGCGACGCGACGATAGCCCCCTGGTGGAAGGCTTC
GTCGAATATTTCCTGGAGAATCTGCCGAACGAAGCCAAGGATTGA
Translation:
MISLRQLHYFVEIVESGGFSRAAERLFVAQSALSRQVRELEDSIGTPLLRRGPRQVELTPAGRAFLPRAQRL
LGDLEAARRLAREVGEGGHGLLRLGHSSSVPLVGGLQAALRGYLAAQSGVRLELTQQSSEQQLADLAEGRLD
LGLLRLPVLRQHPRLHLRALYREPLLLALAADHPLARREAPVALAALAGETFVSIPHLQRGGLSYRAAELCL
GAGFYPRPARALSRKTSQLQLIEAGFGVALVPASMRAIAPPAVRFMSLAEAEAYSEVALAWRRDDSPLVEGF
VEYFLENLPNEAKD*
AnnotationID:2675GeneID:2667
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:25
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66653.1|AE016293_3 (AE016777) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 292

 Score =  316 bits (810), Expect = 9e-86
 Identities = 176/289 (60%), Positives = 208/289 (71%), Gaps = 2/289 (0%)

>emb|CAE38024.1| (BX640431) Putative LysR-family transcriptional regulator
           [Bordetella parapertussis]
          Length = 298

 Score =  168 bits (425), Expect = 4e-41
 Identities = 102/295 (34%), Positives = 155/295 (52%), Gaps = 7/295 (2%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  115 bits (288), Expect = 1e-26
Identities = 105/305 (34%), Positives = 146/305 (47%), Gaps = 12/305 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 91.6 bits (227), Expect = 2e-19
Identities = 70/215 (32%), Positives = 97/215 (45%), Gaps = 10/215 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22482




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31779




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2667_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2667
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4385
                           PA3776_tr
                           translation of PA3776
                           302
                           99.33
                           99.33
                           0
                           1486.0
     

     
     
127973
                           gb|AAG07163.1|AE004796_8
                           (AE004796) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           302
                           99.33
                           99.33
                           0
                           1486.0
     

     
     
127974
                           gb|AAN66653.1|AE016293_3
                           (AE016777) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           302
                           58.27
                           68.87
                           10
                           807.0
     

     






      

          
GC ORFID: 45669How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3776Glimmer Score: 

          
Start: 3661733Stop: 3662641

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3776 translation of PA3776Homolog Bit Score 577.0

          
Other Homologs:  t_PA3776 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCTCTTTGCGGCAACTCCATTACTTCGTCGAAATCGTCGAGTCCGGCGGCTTCAGCCGTGCCGCCGAA 
CGCCTGTTCGTCGCCCAGTCGGCGCTCAGCCGGCAGGTGCGCGAACTGGAGGACAGCATCGGCACCCCACTG 
CTCCGCCGCGGTCCGCGCCAGGTCGAGCTGACGCCGGCCGGTCGCGCCTTCCTGCCACGCGCGCAGCGCCTG 
CTCGGCGACCTGGAGGCCGCCCGGCGCCTGGCTCGCGAGGTCGGTGAAGGCGGCCATGGCCTGCTGCGCCTG 
GGGCACTCCAGCTCGGTGCCGCTGGTGGGCGGCCTGCAAGCGGCGCTGCGCGGCTACCTCGCGGCGCAGAGC 
GGCGTCCGCCTGGAACTGACCCAGCAATCCTCCGAGCAGCAACTCGCCGATCTCGCCGAAGGACGCCTGGAC 
CTTGGCCTGCTGCGCCTGCCGGTGCTGCGCCAGCATCCCCGGCTGCACCTGCGCGCCCTGTACCGCGAGCCG 
TTGCTCCTGGCTCTCGCCGCCGACCATCCGCTGGCCCGCCGTGAAGCCCCCGTGGCCCTGGCCGCCCTGGCC 
GGAGAAACCTTCGTCTCCATTCCCCACCTGCAACGCGGCGGCCTCAGCTATCGCGCCGCCGAACTCTGCCTC 
GGCGCCGGTTTCTACCCACGCCCGGCGCGCGCGCTGTCGCGCAAGACCAGCCAGTTGCAACTGATCGAGGCC 
GGCTTCGGCGTCGCCCTGGTGCCCGCCTCGATGCGCGCCATCGCACCGCCCGCCGTGCGCTTCATGTCTCTG 
GCCGAGGCCGAGGCATACAGCGAGGTGGCGCTGGCCTGGCGACGCGACGATAGCCCCCTGGTGGAAGGCTTC 
GTCGAATATTTCCTGGAGAATCTGCCGAACGAAGCCAAGGATTGA