ViewGene

Locus Name:
GeneID:
Location:

GeneID:2666
TrivialName: PA14_19670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19670
PAO1 Ortholog Locus:PA3433
Sequence Length:894
Protein Length:297
Start: 1698429
Stop: 1697536
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06821.1|AE004764_7 (AE004764) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 295/297 (99%), Positives = 296/297 (99%)
Sequence:
ATGGAATTCCGTCAACTCCGCAGCTTCGTCGAAGTGGTCCGCCAGGGCAGCTTCACCCAGGCGGCTCAGGTC
CGCCACGCCAGCCAGTCGACCATCAGCAAGCAGGTCGCCCAACTGGAGCAGAGCCTTGGCGTGCAGGTATTG
GAACGCAACGGGCCGCACGTGCGCCTGACCGACGCCGGCGCCGTGGTGTTTCGCCGCGCCGAGGAGATGCTG
CGGCTGCGCCGCGACCTGCTCAGCGAACTGGACGACCTCAGCCAACTCAACCGCGGCGAACTGCGCCTGGGC
CTGCCATTGCTCGGTGCCGACGCGCTGTTCGCCCAACGCTTCGCCGAATACCGGCGGCGCTATCCGAACATC
GCCGTGCACCTGGTGGAAGGCGGCAGCAAGACCATGGAGCAGGCGGTGCTGGCCGGCGAGCTGGAACTGGCC
GGCAGCCTCACCCCGGCGGACGACGGCTTCGACTACCAGCCGTTCTGCAACGAACCGCTGGACGTGCTGCTG
CCGGCCGGGCATCCCAAGGCCGCTGCCGCCAGCGTCGCCCTCGGCGAACTGGCGGACAGCCCGTTCCTGCTC
TACCAGCAGAGCTTCACCCTCAACGACCGCCTGCTGCGCGCCTGCCTGGATGCCGGCTTCAGCCCGCGCGAA
GGCGGCCGCAGCGGCCAGGCCGACTTCCTCGGCGCGCTGGTGGCGGCCAACCAGGGGGTGGTGCTGCTACCG
CGGGCGATCGCTCGCGAGATCGAACGCCCGGGAGTGGTGCGGGTCCTGCTCAGGGAGCCGGACCTGCGCTGG
GACATCGCCTTCATCTGGCGCCGGGGCGGCTACCTGTCGCGGGCGGCGCAGGCCTGGCTGGAGCTGCTGCGC
GAGCAGCCGCTGGAGGAAAGCCCGGCGTAA
Translation:
MEFRQLRSFVEVVRQGSFTQAAQVRHASQSTISKQVAQLEQSLGVQVLERNGPHVRLTDAGAVVFRRAEEML
RLRRDLLSELDDLSQLNRGELRLGLPLLGADALFAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELELA
GSLTPADDGFDYQPFCNEPLDVLLPAGHPKAAAASVALGELADSPFLLYQQSFTLNDRLLRACLDAGFSPRE
GGRSGQADFLGALVAANQGVVLLPRAIAREIERPGVVRVLLREPDLRWDIAFIWRRGGYLSRAAQAWLELLR
EQPLEESPA*
AnnotationID:2674GeneID:2666
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:57
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA3433
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03466,COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70200.1|AE016659_6 (AE016791) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 293

 Score =  410 bits (1054), Expect = e-114
 Identities = 204/290 (70%), Positives = 238/290 (82%), Gaps = 1/290 (0%)

>gb|AAN54119.1|AE015549_5 (AE015549) transcriptional regulator, LysR family [Shewanella
           oneidensis MR-1]
          Length = 296

 Score =  219 bits (557), Expect = 2e-56
 Identities = 120/291 (41%), Positives = 180/291 (61%), Gaps = 2/291 (0%)
Structural Features:
pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.0% aligned
Score =  128 bits (323), Expect = 8e-31
Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  134 bits (337), Expect = 1e-32
Identities = 108/301 (35%), Positives = 157/301 (52%), Gaps = 8/301 (2%)
Genomic Context:
Comment:
ReferenceID:5335
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22480
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32134
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2666_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2666

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4384 PA3433_tr translation of PA3433 297 99.32 99.66 0 1486.0
127964 gb|AAG06821.1|AE004764_7 (AE004764) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 297 99.32 99.66 0 1486.0
127965 gb|AAN70200.1|AE016659_6 (AE016791) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 298 68.45 79.86 6 1049.0
127966 gb|AAN29273.1|AE014344_8 (AE014344) transcriptional regulator, LysR family [Brucella suis 1330] 299 45.81 63.21 5 650.0
127967 gb|AAL52779.1| (AE009595) TRANSCRIPTIONAL REGULATORY PROTEIN, LYSR FAMILY [Brucella melitensis 16M] 299 45.81 63.21 5 643.0
GC ORFID: 45668How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3433Glimmer Score:
Start: 3255503Stop: 3256396
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3433 translation of PA3433Homolog Bit Score 577.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4269 (ORF: BLASTX 241.0), t_PA3433 (ORF: GLIMMER)
GC ORF Sequence
ATGGAATTCCGTCAACTCCGCAGCTTCGTCGAAGTGGTCCGCCAGGGCAGCTTCACCCAGGCGGCTCAGGTC
CGCCACGCCAGCCAGTCGACCATCAGCAAGCAGGTCGCCCAACTGGAGCAGAGCCTTGGCGTGCAGGTATTG
GAACGCAACGGGCCGCACGTGCGCCTGACCGACGCCGGCGCCGTGGTGTTTCGCCGCGCCGAGGAGATGCTG
CGGCTGCGCCGCGACCTGCTCAGCGAACTGGACGACCTCAGCCAACTCAACCGCGGCGAACTGCGCCTGGGC
CTGCCATTGCTCGGTGCCGACGCGCTGTTCGCCCAACGCTTCGCCGAATACCGGCGGCGCTATCCGAACATC
GCCGTGCACCTGGTGGAAGGCGGCAGCAAGACCATGGAGCAGGCGGTGCTGGCCGGCGAGCTGGAACTGGCC
GGCAGCCTCACCCCGGCGGACGACGGCTTCGACTACCAGCCGTTCTGCAACGAACCGCTGGACGTGCTGCTG
CCGGCCGGGCATCCCAAGGCCGCTGCCGCCAGCGTCGCCCTCGGCGAACTGGCGGACAGCCCGTTCCTGCTC
TACCAGCAGAGCTTCACCCTCAACGACCGCCTGCTGCGCGCCTGCCTGGATGCCGGCTTCAGCCCGCGCGAA
GGCGGCCGCAGCGGCCAGGCCGACTTCCTCGGCGCGCTGGTGGCGGCCAACCAGGGGGTGGTGCTGCTACCG
CGGGCGATCGCTCGCGAGATCGAACGCCCGGGAGTGGTGCGGGTCCTGCTCAGGGAGCCGGACCTGCGCTGG
GACATCGCCTTCATCTGGCGCCGGGGCGGCTACCTGTCGCGGGCGGCGCAGGCCTGGCTGGAGCTGCTGCGC
GAGCAGCCGCTGGAGGAAAGCCCGGCGTAA