ViewGene
Locus Name:
GeneID:
Location:

GeneID:2664
TrivialName: PA14_26330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26330
PAO1 Ortholog Locus:PA2917
Sequence Length:837
Protein Length:278
Start: 2296065
Stop: 2296901
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06305.1|AE004718_2 (AE004718) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGGGCAGCCGAGACTGGATCGACCTGGCCCGCGACGCCGAGACCGGGATCGAGACCCTGCGCGCCCATTTC
GAGGGCCACGCCTACGATCCGCACTGGCACGACAGCTACCTGATCGGCTACACCGAGATCGGCGTGCAGCAA
TTCAACTGCCGCCGACGCCGACACGACAGCACCGCCGGCCAGGTATTCCTGGTCGAACCGGGGGAGATCCAC
GACGGTCGCGCGCCGATCGCCGGCGGCTTCACCTACTCGATGCTGTACCTGCAGCCGGACTGGCTGCGGCGC
GAACTGCGGGCGACCTTCGACGATGCGCCCAGCGACCGCGACCCCGGCTTCCACGCCAACCTCACCGAAGAC
CCGCGCCTGACCCTGGCCATCGCCCAGGCCTTCCGCGTCCTGCATGGCCGCGAGCTGCGACTGCTGCGGCAG
ACCGCCCTGGAGCTGGTGCTGGAGCGGCTGCGCGTGCACCTCGGCTGGCGCGAGGCGAAGCCATTCGATCCA
CGCCTGCCGCTGGTGGCGCAGAAAGCCCGCGACTACCTGCATGCGCACTTCTACCAGGACATCGGCCTGGAC
GAGCTGGCCAGCGCCTGCGGCACCGACCGCTTCCGCCTGAACCGTGCATTCAAGGCCGCCTACGGCTTGCCA
CCCTACGCCTACCTGGTCCAGTTGCGGCTGGCCAAGGCGCGGCAGATGCTCGCTGTCGGCGGGCAACCGGCG
GACCTCGCCAGCGCCCTCGGCTTCGCCGACCAGAGCCATCTCGGCCGCTGGTTCCGGCGCGCCTACGGGATG
ACTCCGGCGGCCTACCGCAGGCAGTGCACCCAGCTTCCAGACTGA
Translation:
MGSRDWIDLARDAETGIETLRAHFEGHAYDPHWHDSYLIGYTEIGVQQFNCRRRRHDSTAGQVFLVEPGEIH
DGRAPIAGGFTYSMLYLQPDWLRRELRATFDDAPSDRDPGFHANLTEDPRLTLAIAQAFRVLHGRELRLLRQ
TALELVLERLRVHLGWREAKPFDPRLPLVAQKARDYLHAHFYQDIGLDELASACGTDRFRLNRAFKAAYGLP
PYAYLVQLRLAKARQMLAVGGQPADLASALGFADQSHLGRWFRRAYGMTPAAYRRQCTQLPD*
AnnotationID:2672GeneID:2664
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:44
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2917
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02311
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68042.1|AE016436_10 (AE016783) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 276

 Score =  370 bits (951), Expect = e-102
 Identities = 176/274 (64%), Positives = 216/274 (78%)








 
Structural Features:
pfam02311, AraC_binding, AraC-like ligand binding domain.






   
Genomic Context:






   
Comment:


















    ReferenceID:5331




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22476




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2664_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2664
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4382
                           PA2917_tr
                           translation of PA2917
                           278
                           99.99
                           99.99
                           0
                           1486.0
     

     
     
127906
                           gb|AAG06305.1|AE004718_2
                           (AE004718) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1486.0
     

     
     
127907
                           gb|AAN68042.1|AE016436_10
                           (AE016783) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           278
                           63.30
                           77.69
                           2
                           949.0
     

     






      

          
GC ORFID: 45666How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2917Glimmer Score: 

          
Start: 2657860Stop: 2657024

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2917 translation of PA2917Homolog Bit Score 577.0

          
Other Homologs:  t_PA2917 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAGCCGAGACTGGATCGACCTGGCCCGCGACGCCGAGACCGGGATCGAGACCCTGCGCGCCCATTTC 
GAGGGCCACGCCTACGATCCGCACTGGCACGACAGCTACCTGATCGGCTACACCGAGATCGGCGTGCAGCAA 
TTCAACTGCCGCCGACGCCGACACGACAGCACCGCCGGCCAGGTATTCCTGGTCGAACCGGGGGAGATCCAC 
GACGGTCGCGCGCCGATCGCCGGCGGCTTCACCTACTCGATGCTGTACCTGCAGCCGGACTGGCTGCGGCGC 
GAACTGCGGGCGACCTTCGACGATGCGCCCAGCGACCGCGACCCCGGCTTCCACGCCAACCTCACCGAAGAC 
CCGCGCCTGACCCTGGCCATCGCCCAGGCCTTCCGCGTCCTGCATGGCCGCGAGCTGCGACTGCTGCGGCAG 
ACCGCCCTGGAGCTGGTGCTGGAGCGGCTGCGCGTGCACCTCGGCTGGCGCGAGGCGAAGCCATTCGATCCA 
CGCCTGCCGCTGGTGGCGCAGAAAGCCCGCGACTACCTGCATGCGCACTTCTACCAGGACATCGGCCTGGAC 
GAGCTGGCCAGCGCCTGCGGCACCGACCGCTTCCGCCTGAACCGTGCATTCAAGGCCGCCTACGGCTTGCCA 
CCCTACGCCTACCTGGTCCAGTTGCGGCTGGCCAAGGCGCGGCAGATGCTCGCTGTCGGCGGGCAACCGGCG 
GACCTCGCCAGCGCCCTCGGCTTCGCCGACCAGAGCCATCTCGGCCGCTGGTTCCGGCGCGCCTACGGGATG 
ACTCCGGCGGCCTACCGCAGGCAGTGCACCCAGCTTCCAGACTGA