ViewGene
Locus Name:
GeneID:
Location:

GeneID:2663
TrivialName: PA14_30130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30130
PAO1 Ortholog Locus:PA2628
Sequence Length:891
Protein Length:296
Start: 2610176
Stop: 2609286
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06016.1|AE004691_7 (AE004691) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/296 (99%), Positives = 296/296 (100%)
Sequence:
ATGGCCATGGCCGGGAGCCAGCCGCAACGGCGCAACAGCCCGACCCAGGGCGCCGCCATGCTGGCTCTTTCG
GCGCTGTTCTTCGCCCTGATGGGCGGCCTGATCCGCGAGGCCTCCAGCACCGTCAACAACGAAACCGTGGTG
TTCTTCCGCAACCTCGTCGGCGTGCTGTTCTTCCTGCCCCTGGCGCTGACTCGCGGCATCGGCCCGCTGCGC
ACCCGCCGCCCGCTATCGCACCTGCTGCGCACCACCTACGGCCTGGGCGGCATGTACTGCTACTTCTACGCC
CTCGCCCACCTACCGCTGACCGACGCTATGCTGTTCAGCTATGCCGCGCCGGTGTTCACGCCGCTGATCGCA
CACCTGTGGATCAAGGAGCCGCTGACCCGCCGCATGATGGTCGCCACCCTGGTCGGCTTCCTCGGCGTGCTG
CTGGTGGCCAGGCCCAGCGGCGCGGTAGTGGCGCCGATCGCCCTGGTCGGCATCGCTTCCAGCCTGATGGCC
GCCTGTGCCTTCGTCTCGATCCGCGAAATGAGCGACAGCGAGCCGGCGTATCGCATCGTCTTCTACTTCGCC
CTGTTCGGCACCCTGTTCTCCGCCGTACCGCTGGCCTGGGCCTGGCAGCCGCTGAACGGCCGGGAACTGCTC
CTGCTGCTCGGCGCCGGACTGTTCGCCAGCCTCGGCCAACTGACCATGTCGCAGGCCTATGCCCTGGCCTCC
CCGGGAGTGATCGGACCGATCGCCTACATGGCCATCGTTTTCGCCGGGGTGATCGCCTGGCTGCGCTGGGAG
GAACTGCCCAGCCACACGTCGCTGCTCGGCGCCGCCCTGATCTTCGCCGCCAGTCTGATCCCTCTGCTGGGC
AACCGCCCCGCCGAAAGGCCCCGCTGA
Translation:
MAMAGSQPQRRNSPTQGAAMLALSALFFALMGGLIREASSTVNNETVVFFRNLVGVLFFLPLALTRGIGPLR
TRRPLSHLLRTTYGLGGMYCYFYALAHLPLTDAMLFSYAAPVFTPLIAHLWIKEPLTRRMMVATLVGFLGVL
LVARPSGAVVAPIALVGIASSLMAACAFVSIREMSDSEPAYRIVFYFALFGTLFSAVPLAWAWQPLNGRELL
LLLGAGLFASLGQLTMSQAYALASPGVIGPIAYMAIVFAGVIAWLRWEELPSHTSLLGAALIFAASLIPLLG
NRPAERPR*
AnnotationID:2671GeneID:2663
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 13:01:20
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA2628
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM41076.1| (AE012280) integral membrane protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 303

 Score =  164 bits (416), Expect = 4e-40
 Identities = 88/281 (31%), Positives = 154/281 (54%), Gaps = 4/281 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5329




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22474




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33195




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2663_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2663
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4381
                           PA2628_tr
                           translation of PA2628
                           296
                           99.32
                           99.99
                           0
                           1486.0
     

     
     
127905
                           gb|AAG06016.1|AE004691_7
                           (AE004691) hypothetical protein PA2628 [Pseudomonas aeruginosa PAO1]
                           296
                           99.32
                           99.99
                           0
                           1486.0
     

     






      

          
GC ORFID: 45665How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2628Glimmer Score: 

          
Start: 2343750Stop: 2344640

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2628 translation of PA2628Homolog Bit Score 577.0

          
Other Homologs:  t_PA2628 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATGGCCGGGAGCCAGCCGCAACGGCGCAACAGCCCGACCCAGGGCGCCGCCATGCTGGCTCTTTCG 
GCGCTGTTCTTCGCCCTGATGGGCGGCCTGATCCGCGAGGCCTCCAGCACCGTCAACAACGAAACCGTGGTG 
TTCTTCCGCAACCTCGTCGGCGTGCTGTTCTTCCTGCCCCTGGCGCTGACTCGCGGCATCGGCCCGCTGCGC 
ACCCGCCGCCCGCTATCGCACCTGCTGCGCACCACCTACGGCCTGGGCGGCATGTACTGCTACTTCTACGCC 
CTCGCCCACCTACCGCTGACCGACGCTATGCTGTTCAGCTATGCCGCGCCGGTGTTCACGCCGCTGATCGCA 
CACCTGTGGATCAAGGAGCCGCTGACCCGCCGCATGATGGTCGCCACCCTGGTCGGCTTCCTCGGCGTGCTG 
CTGGTGGCCAGGCCCAGCGGCGCGGTAGTGGCGCCGATCGCCCTGGTCGGCATCGCTTCCAGCCTGATGGCC 
GCCTGTGCCTTCGTCTCGATCCGCGAAATGAGCGACAGCGAGCCGGCGTATCGCATCGTCTTCTACTTCGCC 
CTGTTCGGCACCCTGTTCTCCGCCGTACCGCTGGCCTGGGCCTGGCAGCCGCTGAACGGCCGGGAACTGCTC 
CTGCTGCTCGGCGCCGGACTGTTCGCCAGCCTCGGCCAACTGACCATGTCGCAGGCCTATGCCCTGGCCTCC 
CCGGGAGTGATCGGACCGATCGCCTACATGGCCATCGTTTTCGCCGGGGTGATCGCCTGGCTGCGCTGGGAG 
GAACTGCCCAGCCACACGTCGCTGCTCGGCGCCGCCCTGATCTTCGCCGCCAGTCTGATCCCTCTGCTGGGC 
AACCGCCCCGCCGAAAGGCCCCGCTGA