ViewGene
Locus Name:
GeneID:
Location:

GeneID:2661
TrivialName: PA14_42910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42910
PAO1 Ortholog Locus:PA1668
Sequence Length:870
Protein Length:289
Start: 3816626
Stop: 3815757
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05057.1|AE004594_9 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 288/289 (99%), Positives = 289/289 (100%)
Sequence:
ATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCC
CAGGGGCCGCTGACCGATTTCGCCGAACCGCCGCGCTTCGAGCAGCTCGAGGAGCGGATGATCTACGCGGCG
CGCCTGCGTCCGGGCGAGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCGGCTTCCGAACTGCTTTCG
GAAGTGGTCCGGCTCAAGCACAGCAGCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCC
ATGAAGCTCTTCGAATTCCGCGCCGTGCAGGATGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTG
CTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCCGTGGGGCAACGAAAGCGAATGGTCGAAGATCAGC
CTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTCCAGTTGCTCGACCGGCTGTCGAAG
AACCCGGTCAAGCATCTGCCGATGCTGGAGCTGATGTACCTCTGCCTGGCCCTCGGCTTCGAGGGCAAGTAC
CGGGTGATGGCTCGCGGCGTGCTCGACCTGGACGGTATTTCCGATGCGCTCTACCGGCAGATCCGCCAGTTG
CGCGGCGACGTGCCGCGCGAACTGTCGCCGCACTGGCAGGGGCTCAGCGACCAGCGTCGCGGCCTGGTGCGG
ATCGTGCCCTGGTGGATGGTGGCGCTGTTCACCCTGGTCTGCCTGGTGGTGATGTATTCGGGATTCGCCTGG
GTTCTCGGCGAGCAACGCGACACGGTGCTGCAGCCTTACCAGTCGCTCGATGCGGCGGCAGGACAGCCCGGT
TCGTAA
Translation:
MIKEREYHEDEKTVLLDHQGQVPAQGPLTDFAEPPRFEQLEERMIYAARLRPGEAFNVSLNPLVAAASELLS
EVVRLKHSSVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYVLCTVVDEAVVTTPWGNESEWSKIS
LLSSFHNETFGGEKFFQLLDRLSKNPVKHLPMLELMYLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQL
RGDVPRELSPHWQGLSDQRRGLVRIVPWWMVALFTLVCLVVMYSGFAWVLGEQRDTVLQPYQSLDAAAGQPG
S*
AnnotationID:2669GeneID:2661
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 08:08:33
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA1668
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31314.1| (BX640439) putative outer membrane protein [Bordetella
           bronchiseptica]
          Length = 426

 Score =  199 bits (507), Expect = 1e-50
 Identities = 103/227 (45%), Positives = 138/227 (60%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5325




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22470




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37181




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2661_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2661
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4379
                           PA1668_tr
                           translation of PA1668
                           289
                           99.65
                           99.99
                           0
                           1487.0
     

     
     
127890
                           gb|AAG05057.1|AE004594_9
                           (AE004594) hypothetical protein PA1668 [Pseudomonas aeruginosa PAO1]
                           289
                           99.65
                           99.99
                           0
                           1487.0
     

     
     
127891
                           gb|AAO58841.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           291
                           79.38
                           87.28
                           2
                           1204.0
     

     
     
127892
                           gb|AAO56058.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           298
                           51.34
                           65.77
                           17
                           743.0
     

     
     
127893
                           emb|CAE31314.1|
                           (BX640439) putative outer membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           457
                           25.38
                           33.91
                           199
                           510.0
     

     






      

          
GC ORFID: 45663How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1668Glimmer Score: 

          
Start: 1137283Stop: 1138152

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1668 translation of PA1668Homolog Bit Score 577.0

          
Other Homologs:  t_PA1668 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCC 
CAGGGGCCGCTGACCGATTTCGCCGAACCGCCGCGCTTCGAGCAGCTCGAGGAGCGGATGATCTACGCGGCG 
CGCCTGCGTCCGGGCGAGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCGGCTTCCGAACTGCTTTCG 
GAAGTGGTCCGGCTCAAGCACAGCAGCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCC 
ATGAAGCTCTTCGAATTCCGCGCCGTGCAGGATGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTG 
CTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCCGTGGGGCAACGAAAGCGAATGGTCGAAGATCAGC 
CTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTCCAGTTGCTCGACCGGCTGTCGAAG 
AACCCGGTCAAGCATCTGCCGATGCTGGAGCTGATGTACCTCTGCCTGGCCCTCGGCTTCGAGGGCAAGTAC 
CGGGTGATGGCTCGCGGCGTGCTCGACCTGGACGGTATTTCCGATGCGCTCTACCGGCAGATCCGCCAGTTG 
CGCGGCGACGTGCCGCGCGAACTGTCGCCGCACTGGCAGGGGCTCAGCGACCAGCGTCGCGGCCTGGTGCGG 
ATCGTGCCCTGGTGGATGGTGGCGCTGTTCACCCTGGTCTGCCTGGTGGTGATGTATTCGGGATTCGCCTGG 
GTTCTCGGCGAGCAACGCGACACGGTGCTGCAGCCTTACCAGTCGCTCGATGCGGCGGCAGGACAGCCCGGT 
TCGTAA