ViewGene
Locus Name:
GeneID:
Location:

GeneID:266
TrivialName: PA14_16660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16660
PAO1 Ortholog Locus:PA3690
Sequence Length:2229
Protein Length:742
Start: 1426481
Stop: 1424253
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07078.1|AE004788_8 (AE004788) probable metal-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
Identities = 739/742 (99%), Positives = 739/742 (99%), Gaps = 2/742 (0%)
Sequence:
ATGAGCCACGAACACGCCGACACTTGCTGTCACGGTCACGGTCACGGTCACGGACATGATCATGGGCACCGC
CACGCGCCTCGCCCGGCGGTGGCCGCCATCGGAACCCTGGCCGGCAACGCCGAGTTGCGCTGGAGCGACCTG
CGCATCGAAGCGATGGACTGCCCGACCGAGGAACGCCTGATCCGCGACGCCCTCGGTCGCCAGCCGGCAGTG
GAGTCGCTGGAATTCAACCTGATGCAGCGCCTGCTGCGCGTCCAGCATCGCTTCGACAGCGTCGAGCCGCTG
CAGAAGCTGATCGCCGGCCTCGGCATGCAGGCGGTGCCGCTGGATGCCGGCGAAAATACCGACGGCCCCTCG
CAAGCGCCGGCGAAGCCCTGGTGGCCGCTGGCCCTGGCCGGCGCGATGGCGCTGGCCTCGGAGATCGTCGAA
TGGTTCGGCCTGGCGCCGGACTGGGTGGTCGCCGGCCTCGCCCTGCTGGCCATCCTCGGCGCCGGCCTGCCG
ACCTACCGCAAGGGCTGGATCGCACTGAAGAACCGCAACCTGAACATCAACGCCCTGATGAGTATCGCCGTG
ACCGGCGCCGTGCTCATCGGCCAGTGGCCGGAAGCGGCGATGGTCAGCGTGCTGTTCGCCATCGCCGAGTTG
ATCGAGGCGAAGTCCCTGGATCGCGCGCGCAACGCCATCCGCGGCCTGCTGCAACTGGCTCCGGAACAGGCC
ACCGTGCTGGTCGGCGGCGAATGGAAGGAACTGCCGGCCAAGCAAGTGGAACTGGAAGCCACCGTGCGCGTG
AAGCCCGGCGAACGCATCGCCCTCGACGGCGAGGTGACCAGCGGCCGCTCCAGCGTCAACCAGGCGCCGATC
ACCGGCGAAAGCCTGCCGGTGGAGAAGGAGGTCGGCGAGCCGGTGTTCGCCGGCAGCATCAACGGCGAGGGC
GCGCTGGAGTACCGCGTCACCCGCCGCGCCGACGACAGCACCCTGGCCCGGATCATCCACGCCGTGGAGGAA
GCCCAGGGTTCCCGCGCACCGACCCAGCGTTTCGTCGACAGTTTCGCCCGCGTCTACACCCCGGTGGTATTC
CTCATCGCCCTCGCCACCGCGGTGCTGCCGCCGCTGCTGTTCGGCGGCGCCTGGCTGGACTGGATCTACCGC
GCCCTGGTGCTGCTGGTGATCGCTTGTCCCTGCGCGCTGGTGATCTCCACCCCGGTGACCATCGTCAGCGGC
CTTTCCGCCGCGGCGCGCCTGGGTATCCTGATCAAGGGCGGGGTGTTCCTCGAACTCGGGCGCAAGCTGTCC
TGGGTCGCCCTCGACAAGACCGGCACCATCACCCATGGCAAACCGCAACAGACCGACTACCTGCCGATCGCG
GAGGCTGACGGGACGGATGCACGCCTGCTCGCCGCCAGCCTGGCCGCGCGTTCCGACCACCCGGTATCGCGC
GCCGTGGCCAACGCAGCGGAAGAAGACGGCCTTGCCCTGGGCGTGGTCGAGGACCTCGCCGCCCTGCCGGGA
CGAGGCGTCAGCGGACGCATCGACGGCGTCCTCTACCACCTCGGCAACCATCGCCTGGTGGAGGAACTGGGC
CTCTGCTCGCCGGCCCTGGAAGAGCGCCTGGACGCCCTGGAGCGCCAGGGCAAGACGGTCATCGCGCTGTGC
GATCCGCAGCGCGTGCGGGCCCTGTTCGCCGTCGCAGACGGGGTCAAGGACAGCAGCCGCGAGGCGATCCGC
GAGCTGCACGCGCTGGACGTGAAGACCCTGATGCTCACCGGCGACAACCCGCACACCGCAGCCGCCATCGCT
GCCCAGGTAGGCATCGACGCAGCTCGCGGCAACCTCCTGCCGGAGGACAAGCTGCGTGAAGTGGAAGCGCGC
CAGGCCGACGGCTCGCGGGTCGGCATGGTCGGCGACGGGATCAACGACGCGCCGGCCCTGGCCCGCGCCGAC
ATCGGCTTCGCCATGGGCGCGGCGGGCACCGACACGGCCATCGAGACCGCCGGCGTCGCGCTGATGGACGAC
GACCTGCGCAAGTTGCCGCAATTCGTCCGGCTGTCGCGCACCACCCACGCGATCCTGGTCCAGAACATCACC
CTGGCCCTGGGCATCAAGGCGGTGTTCCTCGCCCTTACCCTGGCCGGGGAAGGCACCCTGTGGATGGCGGTA
TTCGCCGACATGGGCGCCAGCCTGCTGGTGGTGTTCAACGGTCTGCGACTGTTGCGCAAGCGTTTCTGA
Translation:
MSHEHADTCCHGHGHGHGHDHGHRHAPRPAVAAIGTLAGNAELRWSDLRIEAMDCPTEERLIRDALGRQPAV
ESLEFNLMQRLLRVQHRFDSVEPLQKLIAGLGMQAVPLDAGENTDGPSQAPAKPWWPLALAGAMALASEIVE
WFGLAPDWVVAGLALLAILGAGLPTYRKGWIALKNRNLNINALMSIAVTGAVLIGQWPEAAMVSVLFAIAEL
IEAKSLDRARNAIRGLLQLAPEQATVLVGGEWKELPAKQVELEATVRVKPGERIALDGEVTSGRSSVNQAPI
TGESLPVEKEVGEPVFAGSINGEGALEYRVTRRADDSTLARIIHAVEEAQGSRAPTQRFVDSFARVYTPVVF
LIALATAVLPPLLFGGAWLDWIYRALVLLVIACPCALVISTPVTIVSGLSAAARLGILIKGGVFLELGRKLS
WVALDKTGTITHGKPQQTDYLPIAEADGTDARLLAASLAARSDHPVSRAVANAAEEDGLALGVVEDLAALPG
RGVSGRIDGVLYHLGNHRLVEELGLCSPALEERLDALERQGKTVIALCDPQRVRALFAVADGVKDSSREAIR
ELHALDVKTLMLTGDNPHTAAAIAAQVGIDAARGNLLPEDKLREVEARQADGSRVGMVGDGINDAPALARAD
IGFAMGAAGTDTAIETAGVALMDDDLRKLPQFVRLSRTTHAILVQNITLALGIKAVFLALTLAGEGTLWMAV
FADMGASLLVVFNGLRLLRKRF*
AnnotationID:276GeneID:266
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 13:01:49
Gene Name:
Confidence Code:3
GeneProduct:putative metal-transporting P-type ATPase
Cell Localization:()
Synonyms:cadA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2217,KOG0207
Secondary Functional Category(ies):
EC Number:3.6.3.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70704.1|AE016714_2 (AE016793) cadmium translocating P-type ATPase [Pseudomonas putida
           KT2440]
          Length = 750

 Score =  961 bits (2484), Expect = 0.0
 Identities = 514/748 (68%), Positives = 584/748 (78%), Gaps = 10/748 (1%)

>emb|CAC28873.1| (AJ278984) Pb-efflux ATPase [Ralstonia metallidurans]
          Length = 798

 Score =  904 bits (2335), Expect = 0.0
 Identities = 484/717 (67%), Positives = 554/717 (77%), Gaps = 8/717 (1%)

>emb|CAD17470.1| (AL646078) PROBABLE METAL-TRANSPORTING P-TYPE ATPASE TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 784

 Score =  675 bits (1741), Expect = 0.0
 Identities = 385/746 (51%), Positives = 483/746 (64%), Gaps = 25/746 (3%)






 
Structural Features:
COG2217, ZntA, Cation transport ATPase 
[Inorganic ion transport and metabolism]
CD-Length = 713 residues,  99.2% aligned
Score =  678 bits (1752), Expect = 0.0
Identities = 313/714 (43%), Positives = 421/714 (58%), Gaps = 26/714 (3%)

KOG0207, Cation transport ATPase 
[Inorganic ion transport and metabolism]
CD-Length = 951 residues,  79.6% aligned
Score =  469 bits (1209), Expect = 8e-133
Identities = 242/758 (31%), Positives = 366/758 (48%), Gaps = 62/758 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17677




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31857




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:266_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:266
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
444
                           PA3690_tr
                           translation of PA3690
                           742
                           99.59
                           99.59
                           2
                           3725.0
     

     
     
23755
                           gb|AAG07078.1|AE004788_8
                           (AE004788) probable metal-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
                           742
                           99.59
                           99.59
                           2
                           3725.0
     

     
     
23756
                           gb|AAN70704.1|AE016714_2
                           (AE016793) cadmium translocating P-type ATPase [Pseudomonas putida KT2440]
                           759
                           67.85
                           77.20
                           26
                           2503.0
     

     
     
23757
                           gb|AAK48831.1|AF333961_2
                           (AF333961) CadA [Pseudomonas putida]
                           756
                           66.93
                           77.24
                           33
                           2459.0
     

     
     
23758
                           gb|AAO58705.1|
                           (AE016875) cadmium-translocating P-type ATPase [Pseudomonas syringae pv. tomato str. DC3000]
                           761
                           64.91
                           76.08
                           28
                           2437.0
     

     






      

          
GC ORFID: 43268How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3690Glimmer Score: 

          
Start: 3527456Stop: 3529684

          
Length: 2229


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3690 translation of PA3690Homolog Bit Score 1438.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6537 (ORF: BLASTX 940.0), t_PA3690 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCACGAACACGCCGACACTTGCTGTCACGGTCACGGTCACGGTCACGGACATGATCATGGGCACCGC 
CACGCGCCTCGCCCGGCGGTGGCCGCCATCGGAACCCTGGCCGGCAACGCCGAGTTGCGCTGGAGCGACCTG 
CGCATCGAAGCGATGGACTGCCCGACCGAGGAACGCCTGATCCGCGACGCCCTCGGTCGCCAGCCGGCAGTG 
GAGTCGCTGGAATTCAACCTGATGCAGCGCCTGCTGCGCGTCCAGCATCGCTTCGACAGCGTCGAGCCGCTG 
CAGAAGCTGATCGCCGGCCTCGGCATGCAGGCGGTGCCGCTGGATGCCGGCGAAAATACCGACGGCCCCTCG 
CAAGCGCCGGCGAAGCCCTGGTGGCCGCTGGCCCTGGCCGGCGCGATGGCGCTGGCCTCGGAGATCGTCGAA 
TGGTTCGGCCTGGCGCCGGACTGGGTGGTCGCCGGCCTCGCCCTGCTGGCCATCCTCGGCGCCGGCCTGCCG 
ACCTACCGCAAGGGCTGGATCGCACTGAAGAACCGCAACCTGAACATCAACGCCCTGATGAGTATCGCCGTG 
ACCGGCGCCGTGCTCATCGGCCAGTGGCCGGAAGCGGCGATGGTCAGCGTGCTGTTCGCCATCGCCGAGTTG 
ATCGAGGCGAAGTCCCTGGATCGCGCGCGCAACGCCATCCGCGGCCTGCTGCAACTGGCTCCGGAACAGGCC 
ACCGTGCTGGTCGGCGGCGAATGGAAGGAACTGCCGGCCAAGCAAGTGGAACTGGAAGCCACCGTGCGCGTG 
AAGCCCGGCGAACGCATCGCCCTCGACGGCGAGGTGACCAGCGGCCGCTCCAGCGTCAACCAGGCGCCGATC 
ACCGGCGAAAGCCTGCCGGTGGAGAAGGAGGTCGGCGAGCCGGTGTTCGCCGGCAGCATCAACGGCGAGGGC 
GCGCTGGAGTACCGCGTCACCCGCCGCGCCGACGACAGCACCCTGGCCCGGATCATCCACGCCGTGGAGGAA 
GCCCAGGGTTCCCGCGCACCGACCCAGCGTTTCGTCGACAGTTTCGCCCGCGTCTACACCCCGGTGGTATTC 
CTCATCGCCCTCGCCACCGCGGTGCTGCCGCCGCTGCTGTTCGGCGGCGCCTGGCTGGACTGGATCTACCGC 
GCCCTGGTGCTGCTGGTGATCGCTTGTCCCTGCGCGCTGGTGATCTCCACCCCGGTGACCATCGTCAGCGGC 
CTTTCCGCCGCGGCGCGCCTGGGTATCCTGATCAAGGGCGGGGTGTTCCTCGAACTCGGGCGCAAGCTGTCC 
TGGGTCGCCCTCGACAAGACCGGCACCATCACCCATGGCAAACCGCAACAGACCGACTACCTGCCGATCGCG 
GAGGCTGACGGGACGGATGCACGCCTGCTCGCCGCCAGCCTGGCCGCGCGTTCCGACCACCCGGTATCGCGC 
GCCGTGGCCAACGCAGCGGAAGAAGACGGCCTTGCCCTGGGCGTGGTCGAGGACCTCGCCGCCCTGCCGGGA 
CGAGGCGTCAGCGGACGCATCGACGGCGTCCTCTACCACCTCGGCAACCATCGCCTGGTGGAGGAACTGGGC 
CTCTGCTCGCCGGCCCTGGAAGAGCGCCTGGACGCCCTGGAGCGCCAGGGCAAGACGGTCATCGCGCTGTGC 
GATCCGCAGCGCGTGCGGGCCCTGTTCGCCGTCGCAGACGGGGTCAAGGACAGCAGCCGCGAGGCGATCCGC 
GAGCTGCACGCGCTGGACGTGAAGACCCTGATGCTCACCGGCGACAACCCGCACACCGCAGCCGCCATCGCT 
GCCCAGGTAGGCATCGACGCAGCTCGCGGCAACCTCCTGCCGGAGGACAAGCTGCGTGAAGTGGAAGCGCGC 
CAGGCCGACGGCTCGCGGGTCGGCATGGTCGGCGACGGGATCAACGACGCGCCGGCCCTGGCCCGCGCCGAC 
ATCGGCTTCGCCATGGGCGCGGCGGGCACCGACACGGCCATCGAGACCGCCGGCGTCGCGCTGATGGACGAC 
GACCTGCGCAAGTTGCCGCAATTCGTCCGGCTGTCGCGCACCACCCACGCGATCCTGGTCCAGAACATCACC 
CTGGCCCTGGGCATCAAGGCGGTGTTCCTCGCCCTTACCCTGGCCGGGGAAGGCACCCTGTGGATGGCGGTA 
TTCGCCGACATGGGCGCCAGCCTGCTGGTGGTGTTCAACGGTCTGCGACTGTTGCGCAAGCGTTTCTGA