ViewGene
Locus Name:
GeneID:
Location:

GeneID:2659
TrivialName: PA14_72030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72030
PAO1 Ortholog Locus:PA5457
Sequence Length:864
Protein Length:287
Start: 6421239
Stop: 6422102
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08842.1|AE004958_12 (AE004958) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/287 (99%), Positives = 286/287 (99%)
Sequence:
ATGATCCGCGCCCTGCTCCAACGCTGGCGTTCCCGTCCCGCTGCGGCGAGCGAACCGGTGTCGCCACGCATG
TGCGGTCTGCGCGATGCGGTGCTGGATGGCTGGTTCCGCAGCGAAACCGGCGAACTGCTCGCCGGCTTCGCC
ATCGGCGCCCAGGACACCCTGCTCGATCTCGGCTGCGGCGAAGGCGTCGCCACCCTCTTCGCCGCCCGCCAG
GGCGCTTCGGTGATCTTCACCGACAGCGAGGAAGACAAGGTGCGGAGCCTGGCGCAGCAGGTCGAGGCAGTG
GCCCGGCGGCCCTTCACCGGCCTGGTCAGCGACAGCGACCCGCTGCCGCTGCGCGACGCCTGCGCCGACAAG
CTGGTGTGCATGGAAGTGCTCGAACACGTGGCCAACCCAGCGCGGGTGATGGCCGAACTCGTGCGTCTCGGG
CGCCCTGGCGCGCAGTACCTGCTGAGCGTGCCGGACCCGGTCGGCGAACACCTGCAGCAGGGCATCGCCCCG
ACCGACTACTTCCGGGCGCCCAACCACATCCACATCTTCTCCCGCGACGACTTCGCGCGCCTGGTGCAGGAC
GCCGGGCTGGTCATCGAGCACCGCCAGGCCAGCGGCTTCTTCTGGGTGATGGGCATGATCTTCTTCTGGGCC
AGCGAACGGGCCGCCGGCCGTGAGCTCGGCGGCGCCGTCCGCGACCGTATCCAGCCGCCCTACCCGGCGCTG
ATGGAAGACTGGGCACGGCTCTGGGAAAACCTCCTGGCCCGTCCCGACGGTCTGGAGATCAAGCACCTGCTC
GACCATTTCATGCCCAAGAGCCAGGTGATCATCGCGCGCAAGCCGCTCGACCCCGGATCGTCGCGGACATGA
Translation:
MIRALLQRWRSRPAAASEPVSPRMCGLRDAVLDGWFRSETGELLAGFAIGAQDTLLDLGCGEGVATLFAARQ
GASVIFTDSEEDKVRSLAQQVEAVARRPFTGLVSDSDPLPLRDACADKLVCMEVLEHVANPARVMAELVRLG
RPGAQYLLSVPDPVGEHLQQGIAPTDYFRAPNHIHIFSRDDFARLVQDAGLVIEHRQASGFFWVMGMIFFWA
SERAAGRELGGAVRDRIQPPYPALMEDWARLWENLLARPDGLEIKHLLDHFMPKSQVIIARKPLDPGSSRT*
AnnotationID:2667GeneID:2659
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5457
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5321




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22466




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34640




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2659_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2659
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4376
                           PA5457_tr
                           translation of PA5457
                           287
                           99.65
                           99.65
                           0
                           1491.0
     

     
     
127784
                           gb|AAG08842.1|AE004958_12
                           (AE004958) hypothetical protein PA5457 [Pseudomonas aeruginosa PAO1]
                           287
                           99.65
                           99.65
                           0
                           1491.0
     

     
     
4377
                           PA5459_tr
                           translation of PA5459
                           296
                           43.91
                           58.10
                           27
                           620.0
     

     
     
127785
                           gb|AAG08844.1|AE004958_14
                           (AE004958) hypothetical protein PA5459 [Pseudomonas aeruginosa PAO1]
                           296
                           43.91
                           58.10
                           27
                           620.0
     

     






      

          
GC ORFID: 45661How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5457Glimmer Score: 

          
Start: 5684928Stop: 5685791

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5457 translation of PA5457Homolog Bit Score 578.0

          
Other Homologs:  t_PA5459 (ORF: BLASTX 239.0), t_PA5457 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCGCCCTGCTCCAACGCTGGCGTTCCCGTCCCGCTGCGGCGAGCGAACCGGTGTCGCCACGCATG 
TGCGGTCTGCGCGATGCGGTGCTGGATGGCTGGTTCCGCAGCGAAACCGGCGAACTGCTCGCCGGCTTCGCC 
ATCGGCGCCCAGGACACCCTGCTCGATCTCGGCTGCGGCGAAGGCGTCGCCACCCTCTTCGCCGCCCGCCAG 
GGCGCTTCGGTGATCTTCACCGACAGCGAGGAAGACAAGGTGCGGAGCCTGGCGCAGCAGGTCGAGGCAGTG 
GCCCGGCGGCCCTTCACCGGCCTGGTCAGCGACAGCGACCCGCTGCCGCTGCGCGACGCCTGCGCCGACAAG 
CTGGTGTGCATGGAAGTGCTCGAACACGTGGCCAACCCAGCGCGGGTGATGGCCGAACTCGTGCGTCTCGGG 
CGCCCTGGCGCGCAGTACCTGCTGAGCGTGCCGGACCCGGTCGGCGAACACCTGCAGCAGGGCATCGCCCCG 
ACCGACTACTTCCGGGCGCCCAACCACATCCACATCTTCTCCCGCGACGACTTCGCGCGCCTGGTGCAGGAC 
GCCGGGCTGGTCATCGAGCACCGCCAGGCCAGCGGCTTCTTCTGGGTGATGGGCATGATCTTCTTCTGGGCC 
AGCGAACGGGCCGCCGGCCGTGAGCTCGGCGGCGCCGTCCGCGACCGTATCCAGCCGCCCTACCCGGCGCTG 
ATGGAAGACTGGGCACGGCTCTGGGAAAACCTCCTGGCCCGTCCCGACGGTCTGGAGATCAAGCACCTGCTC 
GACCATTTCATGCCCAAGAGCCAGGTGATCATCGCGCGCAAGCCGCTCGACCCCGGATCGTCGCGGACATGA