ViewGene

Locus Name:
GeneID:
Location:

GeneID:2658
TrivialName: PA14_63290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63290
PAO1 Ortholog Locus:PA4788
Sequence Length:858
Protein Length:285
Start: 5648586
Stop: 5649443
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08174.1|AE004892_5 (AE004892) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 283/285 (99%), Positives = 284/285 (99%)
Sequence:
ATGCCCACCGCCTGGCTCGACCTGCCCGCCCCACCCGCCCTGCCCGGCCTGTTCCTGCGCGCCGCACTGCGC
CGCGGCATCCGCGGCAAGGCCCTGCCCGAGCGCGGCCTGCGCAGCCAGGTCACGGTGGACCCGAAGCACCTC
GAGCGCTACCGCCAGGTCTGCGGCTTCCGCGACGACGGCCTGCTGCCGCCGACCTACCCGCACATCCTCGCC
TTCCCGCTGCAGATGGCGCTGCTCACCGACAAGCGCTTCCCCTTCCCGCTGCTCGGTCTGGTCCACCTGGAG
AACCGCATCGACGTGCTGCGCGCGCTCGGCGGCCTCGGCCCGTTCACCGTGAGCGTCGCGGTGGAAAACCTG
CAACCGCACGACAAGGGCGCCACCTTCAGCATCGTCACCCGCCTGGAAGACCAGCTTGGCCTGCTCTGGGTC
GGCGACAGCAAGGTGCTCTGCCGCGGCGTCAAGCTGCCCGGCGAGATTCCGCCGAAAGCCGAGCAGGAGCCG
CTGCCGCTGGAGCCGGCCGACAACTGGAAGGCGCCCGCCGACATCGGCCGGCGCTATGCCCGTGCCGCCGGC
GACTACAACCCGATCCACCTGTCGGCGCCCAGCGCCAAGCTGTTCGGCTTTCCCCGCGCCATCGCCCACGGC
CTGTGGAACAAGGCTCGCAGCCTGGCCGCCCTCGGCGAGCGGCTGCCGGCCTCGGGCTATCGGGTCGAGGTG
CGCTTCCAGAAGCCGGTGCTGCTGCCGGCCAGCCTCACCCTCCTGGCCAGCGCGGCGGCGGCGGACGGCCAG
TTCAGCCTGCGCGGCAAGGACGACCTGCCGCACATGGCCGGGCATTGGAGCCGGCTACAGGGCTGA
Translation:
MPTAWLDLPAPPALPGLFLRAALRRGIRGKALPERGLRSQVTVDPKHLERYRQVCGFRDDGLLPPTYPHILA
FPLQMALLTDKRFPFPLLGLVHLENRIDVLRALGGLGPFTVSVAVENLQPHDKGATFSIVTRLEDQLGLLWV
GDSKVLCRGVKLPGEIPPKAEQEPLPLEPADNWKAPADIGRRYARAAGDYNPIHLSAPSAKLFGFPRAIAHG
LWNKARSLAALGERLPASGYRVEVRFQKPVLLPASLTLLASAAAADGQFSLRGKDDLPHMAGHWSRLQG*
AnnotationID:2666GeneID:2658
AnnotatorUID: diggins
Modification Date/Time: 2005-05-23 12:12:03
Gene Name:phaJ3
Confidence Code:2
GeneProduct:putative (R)-specific enoyl-CoA hydratase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54284.1| (AE016858) MaoC-like domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 285

 Score =  310 bits (794), Expect = 6e-84
 Identities = 155/280 (55%), Positives = 192/280 (68%)

>gb|AAN66207.1|AE016248_10 (AE016776) MaoC domain protein [Pseudomonas putida KT2440]
          Length = 283

 Score =  301 bits (771), Expect = 3e-81
 Identities = 155/283 (54%), Positives = 185/283 (65%)

>emb|CAB77291.1| (AL939120) putative dehydratase [Streptomyces coelicolor A3(2)]
          Length = 291

 Score =  169 bits (427), Expect = 2e-41
 Identities = 108/274 (39%), Positives = 143/274 (52%), Gaps = 20/274 (7%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:5319
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22464
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37693
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2658_cdd.html
URL:
ReferenceID:38159
Author/Investigator(s): Tsuge T, Taguchi K, Seiichi T, Doi Y.
Title: Molecular characterization and properties of (R)-specific enoyl-CoA hydratases from Pseudomonas aeruginosa: metabolic tools for synthesis of polyhydroxyalkanoates via fatty acid beta-oxidation.
PubMed: 12568928
MedLine:
Source:
Int J Biol Macromol. 2003 Jan 15;31(4-5):195-205.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12568928&dopt=Abstract
Homologs By Global Alignment
Gene ID:2658

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4375 PA4788_tr translation of PA4788 285 99.29 99.64 0 1491.0
127780 gb|AAG08174.1|AE004892_5 (AE004892) hypothetical protein PA4788 [Pseudomonas aeruginosa PAO1] 285 99.29 99.64 0 1491.0
127781 dbj|BAC44834.1| (AB075926) (R)-specific enoyl-CoA hydratase [Pseudomonas aeruginosa] 285 99.29 99.64 0 1491.0
127782 gb|AAO54284.1| (AE016858) MaoC-like domain protein [Pseudomonas syringae pv. tomato str. DC3000] 285 54.38 67.36 0 789.0
127783 gb|AAN66207.1|AE016248_10 (AE016776) MaoC domain protein [Pseudomonas putida KT2440] 285 54.38 64.91 2 771.0
GC ORFID: 45660How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4788Glimmer Score:
Start: 4912266Stop: 4913123
Length: 858
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4788 translation of PA4788Homolog Bit Score 578.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3613 (ORF: BLASTX 327.0), t_PA4788 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCACCGCCTGGCTCGACCTGCCCGCCCCACCCGCCCTGCCCGGCCTGTTCCTGCGCGCCGCACTGCGC
CGCGGCATCCGCGGCAAGGCCCTGCCCGAGCGCGGCCTGCGCAGCCAGGTCACGGTGGACCCGAAGCACCTC
GAGCGCTACCGCCAGGTCTGCGGCTTCCGCGACGACGGCCTGCTGCCGCCGACCTACCCGCACATCCTCGCC
TTCCCGCTGCAGATGGCGCTGCTCACCGACAAGCGCTTCCCCTTCCCGCTGCTCGGTCTGGTCCACCTGGAG
AACCGCATCGACGTGCTGCGCGCGCTCGGCGGCCTCGGCCCGTTCACCGTGAGCGTCGCGGTGGAAAACCTG
CAACCGCACGACAAGGGCGCCACCTTCAGCATCGTCACCCGCCTGGAAGACCAGCTTGGCCTGCTCTGGGTC
GGCGACAGCAAGGTGCTCTGCCGCGGCGTCAAGCTGCCCGGCGAGATTCCGCCGAAAGCCGAGCAGGAGCCG
CTGCCGCTGGAGCCGGCCGACAACTGGAAGGCGCCCGCCGACATCGGCCGGCGCTATGCCCGTGCCGCCGGC
GACTACAACCCGATCCACCTGTCGGCGCCCAGCGCCAAGCTGTTCGGCTTTCCCCGCGCCATCGCCCACGGC
CTGTGGAACAAGGCTCGCAGCCTGGCCGCCCTCGGCGAGCGGCTGCCGGCCTCGGGCTATCGGGTCGAGGTG
CGCTTCCAGAAGCCGGTGCTGCTGCCGGCCAGCCTCACCCTCCTGGCCAGCGCGGCGGCGGCGGACGGCCAG
TTCAGCCTGCGCGGCAAGGACGACCTGCCGCACATGGCCGGGCATTGGAGCCGGCTACAGGGCTGA