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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05989.1|AE004689_1 (AE004689) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 297/298 (99%), Positives = 297/298 (99%)
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Sequence:
ATGAAAATCGATGACATCGACGCCTTCGTCGCGGTGATCCGCAACGCTTCCCTGAGCCAGGCCGCCGAGAGC
CTGGGCCTGACCCAGTCTGCGATCACCCGGCGGGTACAGAGCCTGGAGGAGTCCCTCGGAGTGGCATTGCTG
GACCGCAATACCAAGCCGCTCAAACCCACCGCCAGCGGACTGCGGGTCTACGAACAGTGCCGGCGGGTGCTG
CGCGAGGTGGATGGCCTGCGCGAACTGGTGGCCGGCGACGCCACACCAAGTGGCGTGCTGCGCCTGGGCGTG
CCGCAGAGTATCGGCGAGGTGGTGTTGCTGGATGCCCTTCGGCGGCTGGCCGACGAGTACCCGGAGCTGCGC
GCGCAGGTCGGCACTGGCTGGGGCAGCCATTTGCTGGCGCGCCTGGAGAATGCCGAACTGGACGCGGCAGTG
GTGTTGTTTCCGCCAAGCAAGGTGTTCCCCGAAGAACTCGGCGCCACGCCCCTAGGGCGCATGGAACTCTGC
GTGGTGGTCGCCCGCGACAGTGCCATCCAGGCGCGACGCCTGCTCGATTGCTACCACCATGGCTGGGTGCTC
AACCCCGATGGCTGCGGCTTCCGTGCCGGCCTGCAACGGGCCCTGGCCGATCAGGGCCTGGGCCTGCAACTG
AACCTCGAGACTTTCGGCAGCGAGCTGCAACTGGGCCTGGTCGCCGCGGGCCGGGGTCTCGGCCTGGTGCCG
GCGCCGGCCCTGGCGCGTAGCCGCTACCGCGATCAGTTGCAGGTGCTGCAATTGGAGGATTTCCAGCCGCTG
ATCCAGCTCTGGCTGGTGCGTCCGCGCCTGCTGGGCAATCTGGAGACGCCGGCACGGCTGTTCGGCAGGGCG
GTGGCCGAGGGGTTGGATATGCAAGCCGGTTGA |
Translation:
MKIDDIDAFVAVIRNASLSQAAESLGLTQSAITRRVQSLEESLGVALLDRNTKPLKPTASGLRVYEQCRRVL
REVDGLRELVAGDATPSGVLRLGVPQSIGEVVLLDALRRLADEYPELRAQVGTGWGSHLLARLENAELDAAV
VLFPPSKVFPEELGATPLGRMELCVVVARDSAIQARRLLDCYHHGWVLNPDGCGFRAGLQRALADQGLGLQL
NLETFGSELQLGLVAAGRGLGLVPAPALARSRYRDQLQVLQLEDFQPLIQLWLVRPRLLGNLETPARLFGRA
VAEGLDMQAG* |
AnnotationID:2664 | GeneID:2656 |
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Modification Date/Time: |
2005-03-07 11:11:06 |
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GeneProduct: | putative transcriptional regulator, LysR family |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO55314.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 301
Score = 384 bits (986), Expect = e-106
Identities = 191/294 (64%), Positives = 230/294 (78%), Gaps = 1/294 (0%)
>gb|AAN68834.1|AE016516_4 (AE016786) transcriptional regulator, LysR family [Pseudomonas
putida KT2440]
Length = 296
Score = 379 bits (974), Expect = e-105
Identities = 190/294 (64%), Positives = 225/294 (76%), Gaps = 1/294 (0%)
>gb|AAL46324.1| (AE009427) transcriptional regulator, LysR family [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 315
Score = 253 bits (647), Expect = 7e-67
Identities = 133/291 (45%), Positives = 188/291 (64%), Gaps = 1/291 (0%)
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Structural Features: | COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 91.6% aligned
Score = 130 bits (328), Expect = 1e-31
Identities = 97/276 (35%), Positives = 139/276 (50%), Gaps = 7/276 (2%)
pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 90.0% aligned
Score = 103 bits (258), Expect = 3e-23
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 6/191 (3%) |
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