ViewGene

Locus Name:
GeneID:
Location:

GeneID:2656
TrivialName: PA14_30450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30450
PAO1 Ortholog Locus:PA2601
Sequence Length:897
Protein Length:298
Start: 2636760
Stop: 2637656
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05989.1|AE004689_1 (AE004689) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 297/298 (99%), Positives = 297/298 (99%)
Sequence:
ATGAAAATCGATGACATCGACGCCTTCGTCGCGGTGATCCGCAACGCTTCCCTGAGCCAGGCCGCCGAGAGC
CTGGGCCTGACCCAGTCTGCGATCACCCGGCGGGTACAGAGCCTGGAGGAGTCCCTCGGAGTGGCATTGCTG
GACCGCAATACCAAGCCGCTCAAACCCACCGCCAGCGGACTGCGGGTCTACGAACAGTGCCGGCGGGTGCTG
CGCGAGGTGGATGGCCTGCGCGAACTGGTGGCCGGCGACGCCACACCAAGTGGCGTGCTGCGCCTGGGCGTG
CCGCAGAGTATCGGCGAGGTGGTGTTGCTGGATGCCCTTCGGCGGCTGGCCGACGAGTACCCGGAGCTGCGC
GCGCAGGTCGGCACTGGCTGGGGCAGCCATTTGCTGGCGCGCCTGGAGAATGCCGAACTGGACGCGGCAGTG
GTGTTGTTTCCGCCAAGCAAGGTGTTCCCCGAAGAACTCGGCGCCACGCCCCTAGGGCGCATGGAACTCTGC
GTGGTGGTCGCCCGCGACAGTGCCATCCAGGCGCGACGCCTGCTCGATTGCTACCACCATGGCTGGGTGCTC
AACCCCGATGGCTGCGGCTTCCGTGCCGGCCTGCAACGGGCCCTGGCCGATCAGGGCCTGGGCCTGCAACTG
AACCTCGAGACTTTCGGCAGCGAGCTGCAACTGGGCCTGGTCGCCGCGGGCCGGGGTCTCGGCCTGGTGCCG
GCGCCGGCCCTGGCGCGTAGCCGCTACCGCGATCAGTTGCAGGTGCTGCAATTGGAGGATTTCCAGCCGCTG
ATCCAGCTCTGGCTGGTGCGTCCGCGCCTGCTGGGCAATCTGGAGACGCCGGCACGGCTGTTCGGCAGGGCG
GTGGCCGAGGGGTTGGATATGCAAGCCGGTTGA
Translation:
MKIDDIDAFVAVIRNASLSQAAESLGLTQSAITRRVQSLEESLGVALLDRNTKPLKPTASGLRVYEQCRRVL
REVDGLRELVAGDATPSGVLRLGVPQSIGEVVLLDALRRLADEYPELRAQVGTGWGSHLLARLENAELDAAV
VLFPPSKVFPEELGATPLGRMELCVVVARDSAIQARRLLDCYHHGWVLNPDGCGFRAGLQRALADQGLGLQL
NLETFGSELQLGLVAAGRGLGLVPAPALARSRYRDQLQVLQLEDFQPLIQLWLVRPRLLGNLETPARLFGRA
VAEGLDMQAG*
AnnotationID:2664GeneID:2656
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:06
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2601
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55314.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 301

 Score =  384 bits (986), Expect = e-106
 Identities = 191/294 (64%), Positives = 230/294 (78%), Gaps = 1/294 (0%)

>gb|AAN68834.1|AE016516_4 (AE016786) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 296

 Score =  379 bits (974), Expect = e-105
 Identities = 190/294 (64%), Positives = 225/294 (76%), Gaps = 1/294 (0%)

>gb|AAL46324.1| (AE009427) transcriptional regulator, LysR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 315

 Score =  253 bits (647), Expect = 7e-67
 Identities = 133/291 (45%), Positives = 188/291 (64%), Gaps = 1/291 (0%)

Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  91.6% aligned
Score =  130 bits (328), Expect = 1e-31
Identities = 97/276 (35%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  90.0% aligned
Score =  103 bits (258), Expect = 3e-23
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 6/191 (3%)
Genomic Context:
Comment:
ReferenceID:5315
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22460
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33158
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2656_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2656

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4373 PA2601_tr translation of PA2601 298 99.66 99.66 0 1489.0
127728 gb|AAG05989.1|AE004689_1 (AE004689) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 298 99.66 99.66 0 1489.0
127729 gb|AAO55314.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] 301 63.45 76.74 3 984.0
127730 gb|AAN68834.1|AE016516_4 (AE016786) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 304 62.82 74.34 14 970.0
127731 gb|AAL46324.1| (AE009427) transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58 (U. Washington)] 315 43.17 61.58 17 646.0
GC ORFID: 45658How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2601Glimmer Score:
Start: 2317166Stop: 2316270
Length: 897
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2601 translation of PA2601Homolog Bit Score 578.0
Other Homologs: t_PA2601 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAATCGATGACATCGACGCCTTCGTCGCGGTGATCCGCAACGCTTCCCTGAGCCAGGCCGCCGAGAGC
CTGGGCCTGACCCAGTCTGCGATCACCCGGCGGGTACAGAGCCTGGAGGAGTCCCTCGGAGTGGCATTGCTG
GACCGCAATACCAAGCCGCTCAAACCCACCGCCAGCGGACTGCGGGTCTACGAACAGTGCCGGCGGGTGCTG
CGCGAGGTGGATGGCCTGCGCGAACTGGTGGCCGGCGACGCCACACCAAGTGGCGTGCTGCGCCTGGGCGTG
CCGCAGAGTATCGGCGAGGTGGTGTTGCTGGATGCCCTTCGGCGGCTGGCCGACGAGTACCCGGAGCTGCGC
GCGCAGGTCGGCACTGGCTGGGGCAGCCATTTGCTGGCGCGCCTGGAGAATGCCGAACTGGACGCGGCAGTG
GTGTTGTTTCCGCCAAGCAAGGTGTTCCCCGAAGAACTCGGCGCCACGCCCCTAGGGCGCATGGAACTCTGC
GTGGTGGTCGCCCGCGACAGTGCCATCCAGGCGCGACGCCTGCTCGATTGCTACCACCATGGCTGGGTGCTC
AACCCCGATGGCTGCGGCTTCCGTGCCGGCCTGCAACGGGCCCTGGCCGATCAGGGCCTGGGCCTGCAACTG
AACCTCGAGACTTTCGGCAGCGAGCTGCAACTGGGCCTGGTCGCCGCGGGCCGGGGTCTCGGCCTGGTGCCG
GCGCCGGCCCTGGCGCGTAGCCGCTACCGCGATCAGTTGCAGGTGCTGCAATTGGAGGATTTCCAGCCGCTG
ATCCAGCTCTGGCTGGTGCGTCCGCGCCTGCTGGGCAATCTGGAGACGCCGGCACGGCTGTTCGGCAGGGCG
GTGGCCGAGGGGTTGGATATGCAAGCCGGTTGA