ViewGene
Locus Name:
GeneID:
Location:

GeneID:2655
TrivialName: PA14_34690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34690
PAO1 Ortholog Locus:PA2316
Sequence Length:894
Protein Length:297
Start: 3081865
Stop: 3080972
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05704.1|AE004657_11 (AE004657) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 294/297 (98%), Positives = 295/297 (99%)
Sequence:
ATGGACAGcCTCAGCGGTTTCACCGTCTTCGTCCGCGTCGCCGAGACCCGCAGCATCGTCGGCGCCGCCCGG
ACCCTCGGCGTCAGCGCCTCGGCGGTGGGCAAGCGGGTCGCCCGCCTGGAAGAGAAGCTCGGCGTGCGCCTG
TTCCACCGCAGCACCCGCAGCATCACCCTGACCGCCGAAGGCAGCCTGTTCCTCGAGCGCAGCCGGCGCATC
CTGGCCGAGATCGAAGCCACCGAGCTGGAGCTGTCGCAAAGCCGCGAAACCCCGCGCGGGCGCCTGCGGGTC
AGCCTGCCGCTGGTCAGCGGGCTGGTCCTGCCGACGCTCGCCGATTTCATGCAGGCCTATCCGGACATCGAG
CTAGACCTCGACTTCAGCGACCGCGTGGTGGATGTCGTCGACGAAGGCTTCGACGTGGTCCTGCGCACCGGC
CAGCCGGTGGATTCGCGGCTGTCCATGCGCGAACTGGGCGAGTTCCAGTTGAAGCTGGTCGGCTCGCCGACC
TACTTCGCCCGCCACGGCACGCCACGCTGCCCGGAAGACCTGCTGCGGCACACCTGCCTGCACTACCGCTTC
TCCAACACCGGCCGCCTCGAGGAATGGCCGCTGCGCCGCGCGGACGGCGAAGCCCCGCCGCAGATCCCGGTG
TCGATGGTCTGCAACAACATCGAGACCCGCGTCTGCTTCGCCCTGCGCGACCAGGGCATCGCCTGCCTGCCG
GACTTCTCGATCCGCGAGGCGCTGCGCGAAGGGCGCCTGGTCAGCGTTCTCGACGCCTTCTGCGAGCGCCGC
GCGCGGTTCTTCCTGCTCTGGCCGTCCGGCCGCCAGGTCTCGCCCAAGCTGCGCGCCTTCATCGACTTCGTC
GCGCCACGGGTGATCGCCACGCTGGGCTGA
Translation:
MDSLSGFTVFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLERSRRI
LAEIEATELELSQSRETPRGRLRVSLPLVSGLVLPTLADFMQAYPDIELDLDFSDRVVDVVDEGFDVVLRTG
QPVDSRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRHTCLHYRFSNTGRLEEWPLRRADGEAPPQIPV
SMVCNNIETRVCFALRDQGIACLPDFSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV
APRVIATLG*
AnnotationID:2663GeneID:2655
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:13
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2316
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56679.1| (AE016867) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 304

 Score =  335 bits (860), Expect = 1e-91
 Identities = 162/294 (55%), Positives = 209/294 (71%)

>dbj|BAB49828.1| (AP003000) transcriptional regulator [Mesorhizobium loti]
          Length = 307

 Score =  310 bits (793), Expect = 9e-84

>gb|AAL45065.1| (AE009356) transcriptional regulator, LysR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 295

 Score =  305 bits (781), Expect = 2e-82
 Identities = 148/294 (50%), Positives = 204/294 (69%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.0% aligned
Score =  143 bits (362), Expect = 2e-35
Identities = 103/298 (34%), Positives = 142/298 (47%), Gaps = 14/298 (4%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.5% aligned
Score =  118 bits (298), Expect = 6e-28
Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 8/211 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5313




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22458




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32476




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2655_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2655
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4372
                           PA2316_tr
                           translation of PA2316
                           297
                           98.98
                           99.32
                           0
                           1491.0
     

     
     
127719
                           gb|AAG05704.1|AE004657_11
                           (AE004657) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           297
                           98.98
                           99.32
                           0
                           1491.0
     

     
     
127720
                           gb|AAO56679.1|
                           (AE016867) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           304
                           53.94
                           69.40
                           7
                           858.0
     

     
     
127726
                           gb|AAQ57821.1|
                           (AE016910) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           299
                           52.50
                           66.55
                           7
                           754.0
     

     
     
127721
                           emb|CAE13613.1|
                           (BX571863) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           297
                           52.18
                           70.03
                           0
                           793.0
     

     






      

          
GC ORFID: 45657How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2316Glimmer Score: 

          
Start: 1872051Stop: 1872944

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2316 translation of PA2316Homolog Bit Score 578.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1835 (ORF: BLASTX 350.0), t_PA2316 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAGcCTCAGCGGTTTCACCGTCTTCGTCCGCGTCGCCGAGACCCGCAGCATCGTCGGCGCCGCCCGG 
ACCCTCGGCGTCAGCGCCTCGGCGGTGGGCAAGCGGGTCGCCCGCCTGGAAGAGAAGCTCGGCGTGCGCCTG 
TTCCACCGCAGCACCCGCAGCATCACCCTGACCGCCGAAGGCAGCCTGTTCCTCGAGCGCAGCCGGCGCATC 
CTGGCCGAGATCGAAGCCACCGAGCTGGAGCTGTCGCAAAGCCGCGAAACCCCGCGCGGGCGCCTGCGGGTC 
AGCCTGCCGCTGGTCAGCGGGCTGGTCCTGCCGACGCTCGCCGATTTCATGCAGGCCTATCCGGACATCGAG 
CTAGACCTCGACTTCAGCGACCGCGTGGTGGATGTCGTCGACGAAGGCTTCGACGTGGTCCTGCGCACCGGC 
CAGCCGGTGGATTCGCGGCTGTCCATGCGCGAACTGGGCGAGTTCCAGTTGAAGCTGGTCGGCTCGCCGACC 
TACTTCGCCCGCCACGGCACGCCACGCTGCCCGGAAGACCTGCTGCGGCACACCTGCCTGCACTACCGCTTC 
TCCAACACCGGCCGCCTCGAGGAATGGCCGCTGCGCCGCGCGGACGGCGAAGCCCCGCCGCAGATCCCGGTG 
TCGATGGTCTGCAACAACATCGAGACCCGCGTCTGCTTCGCCCTGCGCGACCAGGGCATCGCCTGCCTGCCG 
GACTTCTCGATCCGCGAGGCGCTGCGCGAAGGGCGCCTGGTCAGCGTTCTCGACGCCTTCTGCGAGCGCCGC 
GCGCGGTTCTTCCTGCTCTGGCCGTCCGGCCGCCAGGTCTCGCCCAAGCTGCGCGCCTTCATCGACTTCGTC 
GCGCCACGGGTGATCGCCACGCTGGGCTGA