ViewGene
Locus Name:
GeneID:
Location:

GeneID:2654
TrivialName: PA14_45020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45020
PAO1 Ortholog Locus:PA1500
Sequence Length:891
Protein Length:296
Start: 4014866
Stop: 4015756
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04889.1|AE004579_1 (AE004579) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 295/296 (99%), Positives = 295/296 (99%)
Sequence:
ATGGCCAAGATCGGATTCATCGGCACCGGAATCATGGGCAAGCCCATGGCGCAGAACCTGCAGAAGGCCGGC
CACAGCCTGTTCCTTTCCACCCACCACGACGCCGCTCCGGCCGACCTGCTGGAGGCCGGCGCCATTGCCCTG
GCCAACCCGAAGGAAGTGGCCCAGGAAGCCGAGTTCATCATCGTCATGGTGCCGGACACCCCGCAGGTCGAG
GATGTGCTGTTCCGCAAGGACGGTATCGCCGAGGGCGTCGGCCCGAACAAGGTGGTGATCGACATGAGTTCG
ATCTCCCCCACCGCCACCAAGGGCTTCGCCGAGAAGATCAAGGCTACCGGCGCGCAGTACCTGGACGCCCCG
GTCTCCGGCGGCGAGGTCGGCGCCAAGGCGGCGACCCTGAGCATCATGGTCGGCGGCTGCCCGAACACCTTC
GAACGCGCCCTGCCGCTGTTCCAGGCGATGGGCAAGAACATCACCCGCGTCGGCGGCAACGGCGACGGCCAG
ACCGCCAAGGTGGCCAACCAGATCATCGTCGCGCTGAACATCCAGGCGGTCGCCGAGGCCCTGCTGTTCGCC
GCCCGCAACGGCGCCGATCCGGCCAAGGTGCGCGAGGCGCTGATGGGTGGCTTCGCCTCCTCGCGGATCCTC
GAGGTGCACGGCGAACGCATGGTCAAGGGCACCTTCGACCCGGGCTTCCGCATCAGCCTGCACCAGAAGGAC
CTCAACCTGGCCCTGGCCGGCGCCCGCGAGCTGAACCTGAACCTGCCCAACACCGCCAACGCCCAGCAGGTG
TTCAGCACCTGCGCGGCCATCGGCGGCAGTAACTGGGACCACTCGGCGCTGATCAAGGGCCTGGAGCACATG
GCCAACTTCTCGATCCGCGACGAGTGA
Translation:
MAKIGFIGTGIMGKPMAQNLQKAGHSLFLSTHHDAAPADLLEAGAIALANPKEVAQEAEFIIVMVPDTPQVE
DVLFRKDGIAEGVGPNKVVIDMSSISPTATKGFAEKIKATGAQYLDAPVSGGEVGAKAATLSIMVGGCPNTF
ERALPLFQAMGKNITRVGGNGDGQTAKVANQIIVALNIQAVAEALLFAARNGADPAKVREALMGGFASSRIL
EVHGERMVKGTFDPGFRISLHQKDLNLALAGARELNLNLPNTANAQQVFSTCAAIGGSNWDHSALIKGLEHM
ANFSIRDE*
AnnotationID:2662GeneID:2654
AnnotatorUID: diggins
Modification Date/Time: 2005-05-29 08:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:glxR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative 2-hydroxy-3-oxopropionate reductase
Functional Category Confidence Code:5
COGs:COG2084
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:1.1.1.60
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69879.1|AE016627_1 (AE016790) 2-hydroxy-3-oxopropionate reductase [Pseudomonas putida
           KT2440]
          Length = 297

 Score =  537 bits (1384), Expect = e-152
 Identities = 267/296 (90%), Positives = 284/296 (95%)

>gb|AAL61904.1| (AF289032) putative 3-hydroxyisobutyrate dehydrogenase GhbD
           [Escherichia coli]
          Length = 295

 Score =  403 bits (1035), Expect = e-112
 Identities = 202/292 (69%), Positives = 235/292 (80%), Gaps = 1/292 (0%)

>dbj|BAC48433.1| (AP005946) oxidoredutase [Bradyrhizobium japonicum USDA 110]
          Length = 295

 Score =  378 bits (970), Expect = e-104
 Identities = 197/295 (66%), Positives = 230/295 (77%), Gaps = 5/295 (1%)








 
Structural Features:
COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related 
beta-hydroxyacid dehydrogenases [Lipid metabolism]
CD-Length = 286 residues, 100.0% aligned
Score =  315 bits (809), Expect = 4e-87
Identities = 148/286 (51%), Positives = 183/286 (63%), Gaps = 1/286 (0%)








   
Genomic Context:






   
Comment:
other possible gene name: ybbQ, garR


















    ReferenceID:5311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22456




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37339




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:2654_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2654
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4371
                           PA1500_tr
                           translation of PA1500
                           296
                           99.66
                           99.66
                           0
                           1490.0
     

     
     
127677
                           gb|AAG04889.1|AE004579_1
                           (AE004579) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           296
                           99.66
                           99.66
                           0
                           1490.0
     

     
     
127678
                           gb|AAN69879.1|AE016627_1
                           (AE016790) 2-hydroxy-3-oxopropionate reductase [Pseudomonas putida KT2440]
                           297
                           89.89
                           95.62
                           1
                           1384.0
     

     
     
127679
                           gb|AAL61904.1|
                           (AF289032) putative 3-hydroxyisobutyrate dehydrogenase GhbD [Escherichia coli]
                           297
                           68.01
                           79.12
                           3
                           1035.0
     

     
     
127680
                           dbj|BAC48433.1|
                           (AP005946) oxidoredutase [Bradyrhizobium japonicum USDA 110]
                           298
                           66.10
                           77.18
                           5
                           971.0
     

     






      

          
GC ORFID: 45656How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1500Glimmer Score: 

          
Start: 939043Stop: 938153

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1500 translation of PA1500Homolog Bit Score 578.0

          
Other Homologs:  t_PA1500 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGATCGGATTCATCGGCACCGGAATCATGGGCAAGCCCATGGCGCAGAACCTGCAGAAGGCCGGC 
CACAGCCTGTTCCTTTCCACCCACCACGACGCCGCTCCGGCCGACCTGCTGGAGGCCGGCGCCATTGCCCTG 
GCCAACCCGAAGGAAGTGGCCCAGGAAGCCGAGTTCATCATCGTCATGGTGCCGGACACCCCGCAGGTCGAG 
GATGTGCTGTTCCGCAAGGACGGTATCGCCGAGGGCGTCGGCCCGAACAAGGTGGTGATCGACATGAGTTCG 
ATCTCCCCCACCGCCACCAAGGGCTTCGCCGAGAAGATCAAGGCTACCGGCGCGCAGTACCTGGACGCCCCG 
GTCTCCGGCGGCGAGGTCGGCGCCAAGGCGGCGACCCTGAGCATCATGGTCGGCGGCTGCCCGAACACCTTC 
GAACGCGCCCTGCCGCTGTTCCAGGCGATGGGCAAGAACATCACCCGCGTCGGCGGCAACGGCGACGGCCAG 
ACCGCCAAGGTGGCCAACCAGATCATCGTCGCGCTGAACATCCAGGCGGTCGCCGAGGCCCTGCTGTTCGCC 
GCCCGCAACGGCGCCGATCCGGCCAAGGTGCGCGAGGCGCTGATGGGTGGCTTCGCCTCCTCGCGGATCCTC 
GAGGTGCACGGCGAACGCATGGTCAAGGGCACCTTCGACCCGGGCTTCCGCATCAGCCTGCACCAGAAGGAC 
CTCAACCTGGCCCTGGCCGGCGCCCGCGAGCTGAACCTGAACCTGCCCAACACCGCCAACGCCCAGCAGGTG 
TTCAGCACCTGCGCGGCCATCGGCGGCAGTAACTGGGACCACTCGGCGCTGATCAAGGGCCTGGAGCACATG 
GCCAACTTCTCGATCCGCGACGAGTGA