ViewGene
Locus Name:
GeneID:
Location:

GeneID:2653
TrivialName: PA14_49680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49680
PAO1 Ortholog Locus:PA1138
Sequence Length:876
Protein Length:291
Start: 4420588
Stop: 4419713
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04527.1|AE004543_11 (AE004543) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 290/291 (99%), Positives = 291/291 (100%)
Sequence:
ATGAATTGGGACGACACCCGCGTCTTCCTCGCGCTCTGCCGCGAGCACACCCTGCGCGGCGCCGCCCGCGCG
CTTCACATCGACCAGGCCACGGTGGGCCGGCGGCTGGCGTCGCTGGAGGCGGCGCTGGGCTCGACCCTGTTC
CTGCGCACCTCGTCCGGCTACCTGCTGACCCCGGCCGGCGAGGCGGCCTTCGAACTGGCCGAGAAGATGGAG
CGCTCGGCCCTGGAGCTGCTGCGGCGGACCCGCGGGATGGACCACCGACTGTCCGGCGAGGTGCGGTTGTCC
ACCACCGACTCCCTGGCCGTCGACTTCGTGCTACCCGCCCTGGCCCGCCTGCACCTTGAACACCCGGATATC
CGCGTGCTGCTCGACAGCGCTTCGGCCGTGGTCGACCTGCCCAAGCGCGAGACCGACATCGCGATTCGCACC
CTGCGGCCGGAAAATCCCGATTTGATCCTGAGAAAACTCGCCAGTTGGCCCATGGGCCTGTTCGCTTCCGCG
GACTACCTGCGGCGCAACGGCGTACCGGTGCCCGGCGAGCGTTTCCGCGGCCACGACCTGGTGATGTACGAA
CCCTATTGGCACAGCCAGCGCGAACTGACCCTGGGCGGCGAGCCGATCCGCGACGGCCGGGTGGTCATCGCG
GTGAATTCCAACATGATGGTGCGCCAGGCCCTGGCGCGTGGCCTGGGGCTCTGCGAGCTGCCGCTGTACATG
GGCGAGCGCGACGGACTGGTGCGGGTCTGGCCGCAGCGTGAGCGACGCCGGCCATACGAGGTGTGGATGGTT
ACCCACAAGGACCTGCGCCACACCGCGCGGGTCCGCGCGGTGATCGAGCGGCTGGTGGAGGCGTTCGCCGAA
GCGCCGGCCTGA
Translation:
MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPAGEAAFELAEKME
RSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDIRVLLDSASAVVDLPKRETDIAIRT
LRPENPDLILRKLASWPMGLFASADYLRRNGVPVPGERFRGHDLVMYEPYWHSQRELTLGGEPIRDGRVVIA
VNSNMMVRQALARGLGLCELPLYMGERDGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAE
APA*
AnnotationID:2661GeneID:2653
AnnotatorUID: danlee
Modification Date/Time: 2004-09-10 13:01:54
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA1138
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator. Score: 118, 1e-27
pfam03466, LysR_substrate, LysR substrate binding domain. Score: 100, 2e-22






   
Genomic Context:






   
Comment:


















    ReferenceID:5309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22454




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2653
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4370
                           PA1138_tr
                           translation of PA1138
                           291
                           99.65
                           99.99
                           0
                           1490.0
     

     
     
127675
                           gb|AAG04527.1|AE004543_11
                           (AE004543) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           291
                           99.65
                           99.99
                           0
                           1490.0
     

     
     
127676
                           gb|AAQ58396.1|
                           (AE016912) probable transcriptional regulator LysR family [Chromobacterium violaceum ATCC 12472]
                           296
                           43.24
                           61.82
                           13
                           609.0
     

     






      

          
GC ORFID: 45655How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1138Glimmer Score: 

          
Start: 533320Stop: 534195

          
Length: 876


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1138 translation of PA1138Homolog Bit Score 578.0

          
Other Homologs:  t_PA1138 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTGGGACGACACCCGCGTCTTCCTCGCGCTCTGCCGCGAGCACACCCTGCGCGGCGCCGCCCGCGCG 
CTTCACATCGACCAGGCCACGGTGGGCCGGCGGCTGGCGTCGCTGGAGGCGGCGCTGGGCTCGACCCTGTTC 
CTGCGCACCTCGTCCGGCTACCTGCTGACCCCGGCCGGCGAGGCGGCCTTCGAACTGGCCGAGAAGATGGAG 
CGCTCGGCCCTGGAGCTGCTGCGGCGGACCCGCGGGATGGACCACCGACTGTCCGGCGAGGTGCGGTTGTCC 
ACCACCGACTCCCTGGCCGTCGACTTCGTGCTACCCGCCCTGGCCCGCCTGCACCTTGAACACCCGGATATC 
CGCGTGCTGCTCGACAGCGCTTCGGCCGTGGTCGACCTGCCCAAGCGCGAGACCGACATCGCGATTCGCACC 
CTGCGGCCGGAAAATCCCGATTTGATCCTGAGAAAACTCGCCAGTTGGCCCATGGGCCTGTTCGCTTCCGCG 
GACTACCTGCGGCGCAACGGCGTACCGGTGCCCGGCGAGCGTTTCCGCGGCCACGACCTGGTGATGTACGAA 
CCCTATTGGCACAGCCAGCGCGAACTGACCCTGGGCGGCGAGCCGATCCGCGACGGCCGGGTGGTCATCGCG 
GTGAATTCCAACATGATGGTGCGCCAGGCCCTGGCGCGTGGCCTGGGGCTCTGCGAGCTGCCGCTGTACATG 
GGCGAGCGCGACGGACTGGTGCGGGTCTGGCCGCAGCGTGAGCGACGCCGGCCATACGAGGTGTGGATGGTT 
ACCCACAAGGACCTGCGCCACACCGCGCGGGTCCGCGCGGTGATCGAGCGGCTGGTGGAGGCGTTCGCCGAA 
GCGCCGGCCTGA