ViewGene
Locus Name:
GeneID:
Location:

GeneID:2652
TrivialName: PA14_53940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53940
PAO1 Ortholog Locus:PA0796
Sequence Length:897
Protein Length:298
Start: 4782285
Stop: 4783181
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04185.1|AE004515_1 (AE004515) carboxyphosphonoenolpyruvate phosphonomutase [Pseudomonas aeruginosa PAO1]
Identities = 298/298 (100%), Positives = 298/298 (100%)
Sequence:
ATGAGCCAGACGTCCCTTACCCCCGGCCAGCGCTTCCGCGAAGCCGTGGCCACCGAGCACCCGCTGCAGGTG
GTCGGCACCATCAACGCCAACCACGCCCTGCTGGCCAAGCGCGCCGGCTTCAAGGCCATCTACCTGTCCGGC
GGCGGCGTCGCTGCCGGTTCCCTGGGCCTGCCGGACCTGGGCATCAGCGGCCTCGACGACGTGCTCACCGAC
GTGCGCCGGATCACCGACGTCTGCGACCTGCCGCTGCTGGTGGACGTCGACACCGGCTTCGGCTCCTCGGCG
TTCAACGTCGCCCGCACGGTGAAGTCGATGATCAAGTTCGGCGCCGCCGCGATGCATATCGAGGACCAGGTC
GGCGCCAAGCGCTGCGGCCATCGGCCGAACAAGGAGATCGTCTCGCAGCAGGAGATGGTCGACCGCATCAAG
GCCGCCGTCGATGCCCGCAGCGACGACTCCTTCGTGATCATGGCGCGCACCGACGCGCTGGCCGTGGAAGGC
CTGCAGGCCGCCATCGACCGCGCCTGCGCCTGCGTCGAGGCCGGCGCCGATATGATCTTCCCGGAAGCCATG
ACCGAACTGGCCATGTACAAGGAGTTCGCCGCCGCGGTGAAGGTGCCGGTGCTGGCCAACATCACCGAGTTC
GGCGCCACCCCGCTGTTCACCACCGACGAACTGGCCTCCGCCGACGTGTCCCTGGTGCTCTACCCGCTGTCG
GCCTTCCGCGCCATGAACAAGGCGGCGGAGAACGTCTACACCGCGATCCGTCGCGACGGCACCCAGAAGAAC
GTGATCGATACCATGCAGACCCGCATGGAGCTGTACGATCGCATCGATTACCACAGCTTCGAGCAGAAGCTC
GACGCGCTCTTCGCGCAGAAGAAGAACGCCTGA
Translation:
MSQTSLTPGQRFREAVATEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGLPDLGISGLDDVLTD
VRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAMHIEDQVGAKRCGHRPNKEIVSQQEMVDRIK
AAVDARSDDSFVIMARTDALAVEGLQAAIDRACACVEAGADMIFPEAMTELAMYKEFAAAVKVPVLANITEF
GATPLFTTDELASADVSLVLYPLSAFRAMNKAAENVYTAIRRDGTQKNVIDTMQTRMELYDRIDYHSFEQKL
DALFAQKKNA*
AnnotationID:2660GeneID:2652
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:55
Gene Name:prpB
Confidence Code:2
GeneProduct:carboxyphosphonoenolpyruvate phosphonomutase
Cell Localization:()
Synonyms:PA0796, bcpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:CPEP phosphonomutase
Functional Category Confidence Code:5
COGs:COG2513
Secondary Functional Category(ies):Central intermediary metabolism, Fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
      CD-Length = 289 residues,  98.6% aligned
      Score =  368 bits (947), Expect = 7e-103






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5307




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22452




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2652
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4369
                           PA0796_tr
                           translation of PA0796
                           298
                           99.99
                           99.99
                           0
                           1491.0
     

     
     
127619
                           gb|AAG04185.1|AE004515_1
                           (AE004515) carboxyphosphonoenolpyruvate phosphonomutase [Pseudomonas aeruginosa PAO1]
                           298
                           99.99
                           99.99
                           0
                           1491.0
     

     
     
127620
                           gb|AAN67947.1|AE016427_2
                           (AE016782) carboxyvinyl-carboxyphosphonate phosphorylmutase, putative [Pseudomonas putida KT2440]
                           298
                           89.26
                           93.62
                           2
                           1335.0
     

     
     
127621
                           gb|AAO55801.1|
                           (AE016864) methylisocitrate lyase [Pseudomonas syringae pv. tomato str. DC3000]
                           298
                           85.90
                           93.62
                           1
                           1312.0
     

     
     
127622
                           gb|AAL03988.1|AF325554_1
                           (AF325554) probable methylisocitric acid lyase [Ralstonia eutropha]
                           302
                           81.12
                           88.74
                           4
                           1244.0
     

     






      

          
GC ORFID: 45654How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0796Glimmer Score: 

          
Start: 171622Stop: 170726

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0796 translation of PA0796Homolog Bit Score 578.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1062 (ORF: BLASTX 509.0), t_PA0796 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGACGTCCCTTACCCCCGGCCAGCGCTTCCGCGAAGCCGTGGCCACCGAGCACCCGCTGCAGGTG 
GTCGGCACCATCAACGCCAACCACGCCCTGCTGGCCAAGCGCGCCGGCTTCAAGGCCATCTACCTGTCCGGC 
GGCGGCGTCGCTGCCGGTTCCCTGGGCCTGCCGGACCTGGGCATCAGCGGCCTCGACGACGTGCTCACCGAC 
GTGCGCCGGATCACCGACGTCTGCGACCTGCCGCTGCTGGTGGACGTCGACACCGGCTTCGGCTCCTCGGCG 
TTCAACGTCGCCCGCACGGTGAAGTCGATGATCAAGTTCGGCGCCGCCGCGATGCATATCGAGGACCAGGTC 
GGCGCCAAGCGCTGCGGCCATCGGCCGAACAAGGAGATCGTCTCGCAGCAGGAGATGGTCGACCGCATCAAG 
GCCGCCGTCGATGCCCGCAGCGACGACTCCTTCGTGATCATGGCGCGCACCGACGCGCTGGCCGTGGAAGGC 
CTGCAGGCCGCCATCGACCGCGCCTGCGCCTGCGTCGAGGCCGGCGCCGATATGATCTTCCCGGAAGCCATG 
ACCGAACTGGCCATGTACAAGGAGTTCGCCGCCGCGGTGAAGGTGCCGGTGCTGGCCAACATCACCGAGTTC 
GGCGCCACCCCGCTGTTCACCACCGACGAACTGGCCTCCGCCGACGTGTCCCTGGTGCTCTACCCGCTGTCG 
GCCTTCCGCGCCATGAACAAGGCGGCGGAGAACGTCTACACCGCGATCCGTCGCGACGGCACCCAGAAGAAC 
GTGATCGATACCATGCAGACCCGCATGGAGCTGTACGATCGCATCGATTACCACAGCTTCGAGCAGAAGCTC 
GACGCGCTCTTCGCGCAGAAGAAGAACGCCTGA