ViewGene
Locus Name:
GeneID:
Location:

GeneID:2651
TrivialName: PA14_05200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05200
PAO1 Ortholog Locus:PA0397
Sequence Length:900
Protein Length:299
Start: 454573
Stop: 453674
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03786.1|AE004477_3 (AE004477) probable cation efflux system protein [Pseudomonas aeruginosa PAO1]
Identities = 298/299 (99%), Positives = 298/299 (99%)
Sequence:
ATGAGCGCCGGACACGAGCACAGCTTCGCCCAGACCAACTCGACCCGCCTGAAATGGGCGTTGCTGCTGACC
GGAAGCTTCCTCGTCGCCGAGGTCGTCGGCGGCATCCTCACCGGCAGCCTGGCACTGATCTCCGATGCCGCG
CACATGCTCACCGACGCCGTGGCCCTGGCCATCGCCCTGGCCGCGATCAACATCGCCAGGCGCCCGACCAAC
GATCGCCTGACCTACGGCTACCACCGCTTCGAGATCCTCGCCGCGGCGTTCAACGCGTTCCTGCTGTTCGGC
GTGGCCTTCTATATCCTCTACGCGACCTACGAGCGGCTCAACCAGCCGGCGGAGATCCAGTCCGTGGGCATG
CTGGTGATCGCCGTGCTCGGTCTGCTGGTGAACCTGGCCAGCATGCGCCTGCTGGCGCCGGCCCAGGGCAAC
AGCCTGAACGTCAAGGGCGCCTACCTGGAGGTCTGGAGCGACATGCTCGGCTCGCTGGGGGTGATCGTCGCC
GCTATCGTGATCCGTTTCACCGGCTGGGCCTGGGTCGACTCGCTGGTGGCGGTGCTGATCGGTTTCTGGGTC
CTGCCGCGCACCTGGATCCTGCTGCGCGAGAGCCTGCATGTGTTGCTCGAAGGGGTGCCGAAGGAAATCCAG
TTGGCCGAGCTGCGCGAAGCGCTGCTGGGGATTCCCGGCGTGACCGGGCTGCACGACCTGCATGTGTGGTCG
ATCACCAGCGGCAAGATCAGCCTGACCAGCCATCTGGTCTACGACCCGGCCCTGGTCGACGCCGAGGCGCTG
CTGGGAACGGTGAAGGCGCTGCTGCACGACCGCTACGAGATCGAACACAGCACCCTGCAACTGGAAACCTCG
GCCTGCGCCCAGGCCGAGGAGCCGCTGGCCTACTGA
Translation:
MSAGHEHSFAQTNSTRLKWALLLTGSFLVAEVVGGILTGSLALISDAAHMLTDAVALAIALAAINIARRPTN
DRLTYGYHRFEILAAAFNAFLLFGVAFYILYATYERLNQPAEIQSVGMLVIAVLGLLVNLASMRLLAPAQGN
SLNVKGAYLEVWSDMLGSLGVIVAAIVIRFTGWAWVDSLVAVLIGFWVLPRTWILLRESLHVLLEGVPKEIQ
LAELREALLGIPGVTGLHDLHVWSITSGKISLTSHLVYDPALVDAEALLGTVKALLHDRYEIEHSTLQLETS
ACAQAEEPLAY*
AnnotationID:2659GeneID:2651
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 07:07:21
Gene Name:
Confidence Code:3
GeneProduct:putative cation efflux system protein
Cell Localization:()
Synonyms:czcD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative Co/Zn/Cd efflux system component
Functional Category Confidence Code:5
COGs:COG1230,pfam01545
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA67085.1| (X98451) no histidine kinase, member of
           cation-diffusion-facilitator (CDF) family [Ralstonia
           metallidurans]
          Length = 316

 Score =  379 bits (972), Expect = e-104
 Identities = 187/294 (63%), Positives = 229/294 (77%)

>gb|AAN29441.1|AE014359_2 (AE014359) cobalt-zinc-cadmium resistance protein [Brucella suis
           1330]
          Length = 297

 Score =  323 bits (828), Expect = 8e-88
 Identities = 166/295 (56%), Positives = 214/295 (72%), Gaps = 2/295 (0%)






 
Structural Features:
COG1230, CzcD, Co/Zn/Cd efflux system component 
[Inorganic ion transport and metabolism]
CD-Length = 296 residues,  98.0% aligned
Score =  295 bits (757), Expect = 4e-81
Identities = 153/291 (52%), Positives = 204/291 (70%), Gaps = 2/291 (0%)

pfam01545, Cation_efflux, Cation efflux family. 
CD-Length = 279 residues, 100.0% aligned
Score =  221 bits (566), Expect = 5e-59
Identities = 114/280 (40%), Positives = 167/280 (59%), Gaps = 5/280 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22450




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33732




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2651_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2651
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4368
                           PA0397_tr
                           translation of PA0397
                           299
                           99.66
                           99.66
                           0
                           1492.0
     

     
     
127585
                           gb|AAG03786.1|AE004477_3
                           (AE004477) probable cation efflux system protein [Pseudomonas aeruginosa PAO1]
                           299
                           99.66
                           99.66
                           0
                           1492.0
     

     
     
127586
                           emb|CAA67085.1|
                           (X98451) no histidine kinase, member of cation-diffusion-facilitator (CDF) family [Ralstonia metallidurans]
                           316
                           59.17
                           72.78
                           17
                           969.0
     

     
     
127587
                           dbj|BAA11062.1|
                           (D67044) CzcD [Alcaligenes sp.]
                           316
                           58.86
                           72.46
                           17
                           965.0
     

     
     
127589
                           gb|AAN29441.1|AE014359_2
                           (AE014359) cobalt-zinc-cadmium resistance protein [Brucella suis 1330]
                           300
                           55.66
                           71.66
                           4
                           826.0
     

     






      

          
GC ORFID: 45653How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0397Glimmer Score: 

          
Start: 6255915Stop: 6255016

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0397 translation of PA0397Homolog Bit Score 579.0

          
Other Homologs:  t_PA0397 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGGACACGAGCACAGCTTCGCCCAGACCAACTCGACCCGCCTGAAATGGGCGTTGCTGCTGACC 
GGAAGCTTCCTCGTCGCCGAGGTCGTCGGCGGCATCCTCACCGGCAGCCTGGCACTGATCTCCGATGCCGCG 
CACATGCTCACCGACGCCGTGGCCCTGGCCATCGCCCTGGCCGCGATCAACATCGCCAGGCGCCCGACCAAC 
GATCGCCTGACCTACGGCTACCACCGCTTCGAGATCCTCGCCGCGGCGTTCAACGCGTTCCTGCTGTTCGGC 
GTGGCCTTCTATATCCTCTACGCGACCTACGAGCGGCTCAACCAGCCGGCGGAGATCCAGTCCGTGGGCATG 
CTGGTGATCGCCGTGCTCGGTCTGCTGGTGAACCTGGCCAGCATGCGCCTGCTGGCGCCGGCCCAGGGCAAC 
AGCCTGAACGTCAAGGGCGCCTACCTGGAGGTCTGGAGCGACATGCTCGGCTCGCTGGGGGTGATCGTCGCC 
GCTATCGTGATCCGTTTCACCGGCTGGGCCTGGGTCGACTCGCTGGTGGCGGTGCTGATCGGTTTCTGGGTC 
CTGCCGCGCACCTGGATCCTGCTGCGCGAGAGCCTGCATGTGTTGCTCGAAGGGGTGCCGAAGGAAATCCAG 
TTGGCCGAGCTGCGCGAAGCGCTGCTGGGGATTCCCGGCGTGACCGGGCTGCACGACCTGCATGTGTGGTCG 
ATCACCAGCGGCAAGATCAGCCTGACCAGCCATCTGGTCTACGACCCGGCCCTGGTCGACGCCGAGGCGCTG 
CTGGGAACGGTGAAGGCGCTGCTGCACGACCGCTACGAGATCGAACACAGCACCCTGCAACTGGAAACCTCG 
GCCTGCGCCCAGGCCGAGGAGCCGCTGGCCTACTGA