ViewGene
Locus Name:
GeneID:
Location:

GeneID:2650
TrivialName: PA14_70550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70550
PAO1 Ortholog Locus:PA5343
Sequence Length:852
Protein Length:283
Start: 6284828
Stop: 6283977
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08728.1|AE004946_12 (AE004946) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 283/283 (100%), Positives = 283/283 (100%)
Sequence:
ATGTCGCAAACAGTGATGATCGCCGGCTGCGGCGATGTCGGCGGGCGCCTCGGCGAGGCACTGCTGGCCGAT
GGCTGGCGGGTCCATGGCCTGCGTCGCTCGGTGGACGCCTTGCCGCAGGGGATCCTGCCGGTGGCTGGCGAT
CTGCAGGCTCCGGAGTGTCCCGCGCAGTGGCCGAGCGAGCCGCTCGACTACCTGGTGTACAGCGCCGCCGCC
AGTCAGCACGACGAGGCTGGCTACCGTGCCGCCTACGTCGACGGCCTGCGCCATGTGCTGGGCTGGTTGCAG
GCCCACGGCCAGCGGCCCAGGCGCCTGCTGTTCGTCTCCAGCACCGGGGTCTACGCGCAGACCGATGGCGGC
TGGATCGACGAGGAGTCGCCGGCGCTTTCCCAGGCCTATTCCGGACGGATCATGCTCGACGCCGAGCAGGTC
GCGCTGGACAGCGGGATACCGGCTACCCGCGTGCGCCTGGCCGGCATCTACGGTCCGGGGCGGGAATGGCTG
CTCAACCAGGTGCGCCAGGGTTACCGGGTGGTCAGCGAGCCGCCGCTGTATGCCAACCGGATCCACGCCGAC
GATGCGGCCGGGCTGCTGGCCTTCCTGTTGCGCGCCGATGCCGGCGGCCAGGCGCTGGAGGACTGCTACATC
GGTGTCGACGACGCGCCCGTGGCGATGCATGAGGTGGTCGACTACCTGCGCCAGCGCCTGGGCGTCAGCCAA
TGGGCCGACGAACATTCGGTACGCCGCGCCGGCAGCAAGCGTTGCAGCAACCGCCGCGCCCGGGCGCTCGGC
TGGGTGCCGCGCTATCCGAGCTACCGCGAGGGCTACGCGGCGGTGCTCGGGGACGCCTGA
Translation:
MSQTVMIAGCGDVGGRLGEALLADGWRVHGLRRSVDALPQGILPVAGDLQAPECPAQWPSEPLDYLVYSAAA
SQHDEAGYRAAYVDGLRHVLGWLQAHGQRPRRLLFVSSTGVYAQTDGGWIDEESPALSQAYSGRIMLDAEQV
ALDSGIPATRVRLAGIYGPGREWLLNQVRQGYRVVSEPPLYANRIHADDAAGLLAFLLRADAGGQALEDCYI
GVDDAPVAMHEVVDYLRQRLGVSQWADEHSVRRAGSKRCSNRRARALGWVPRYPSYREGYAAVLGDA*
AnnotationID:2658GeneID:2650
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 19:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative epimerase
Cell Localization:()
Synonyms:PA5343
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0451
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70870.1|AE016731_5 (AE016794) epimerase/dehydratase-related protein [Pseudomonas
           putida KT2440]
          Length = 285

 Score =  403 bits (1035), Expect = e-112
 Identities = 192/277 (69%), Positives = 222/277 (80%)








 
Structural Features:
COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases 
[Cell envelope biogenesis, outer membrane / 
Carbohydrate transport and metabolism]
CD-Length = 314 residues,  94.3% aligned
Score = 93.1 bits (230), Expect = 3e-20
Identities = 74/302 (24%), Positives = 113/302 (37%), Gaps = 40/302 (13%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22448




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34762




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2650_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2650
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4367
                           PA5343_tr
                           translation of PA5343
                           283
                           99.99
                           99.99
                           0
                           1492.0
     

     
     
127579
                           gb|AAG08728.1|AE004946_12
                           (AE004946) hypothetical protein PA5343 [Pseudomonas aeruginosa PAO1]
                           283
                           99.99
                           99.99
                           0
                           1492.0
     

     
     
127580
                           gb|AAN70870.1|AE016731_5
                           (AE016794) epimerase/dehydratase-related protein [Pseudomonas putida KT2440]
                           285
                           68.77
                           79.29
                           2
                           1033.0
     

     
     
127581
                           gb|AAO53624.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           284
                           59.85
                           75.00
                           3
                           914.0
     

     
     
127582
                           emb|CAE38554.1|
                           (BX640433) conserved hypothetical protein [Bordetella parapertussis]
                           303
                           40.59
                           53.46
                           29
                           473.0
     

     






      

          
GC ORFID: 45652How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5343Glimmer Score: 

          
Start: 5548517Stop: 5547666

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5343 translation of PA5343Homolog Bit Score 579.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3136 (ORF: BLASTX 363.0), t_PA5343 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCAAACAGTGATGATCGCCGGCTGCGGCGATGTCGGCGGGCGCCTCGGCGAGGCACTGCTGGCCGAT 
GGCTGGCGGGTCCATGGCCTGCGTCGCTCGGTGGACGCCTTGCCGCAGGGGATCCTGCCGGTGGCTGGCGAT 
CTGCAGGCTCCGGAGTGTCCCGCGCAGTGGCCGAGCGAGCCGCTCGACTACCTGGTGTACAGCGCCGCCGCC 
AGTCAGCACGACGAGGCTGGCTACCGTGCCGCCTACGTCGACGGCCTGCGCCATGTGCTGGGCTGGTTGCAG 
GCCCACGGCCAGCGGCCCAGGCGCCTGCTGTTCGTCTCCAGCACCGGGGTCTACGCGCAGACCGATGGCGGC 
TGGATCGACGAGGAGTCGCCGGCGCTTTCCCAGGCCTATTCCGGACGGATCATGCTCGACGCCGAGCAGGTC 
GCGCTGGACAGCGGGATACCGGCTACCCGCGTGCGCCTGGCCGGCATCTACGGTCCGGGGCGGGAATGGCTG 
CTCAACCAGGTGCGCCAGGGTTACCGGGTGGTCAGCGAGCCGCCGCTGTATGCCAACCGGATCCACGCCGAC 
GATGCGGCCGGGCTGCTGGCCTTCCTGTTGCGCGCCGATGCCGGCGGCCAGGCGCTGGAGGACTGCTACATC 
GGTGTCGACGACGCGCCCGTGGCGATGCATGAGGTGGTCGACTACCTGCGCCAGCGCCTGGGCGTCAGCCAA 
TGGGCCGACGAACATTCGGTACGCCGCGCCGGCAGCAAGCGTTGCAGCAACCGCCGCGCCCGGGCGCTCGGC 
TGGGTGCCGCGCTATCCGAGCTACCGCGAGGGCTACGCGGCGGTGCTCGGGGACGCCTGA