ViewGene
Locus Name:
GeneID:
Location:

GeneID:2648
TrivialName: PA14_43430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43430
PAO1 Ortholog Locus:PA1630
Sequence Length:867
Protein Length:288
Start: 3869817
Stop: 3868951
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05019.1|AE004590_10 (AE004590) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 288/288 (100%), Positives = 288/288 (100%)
Sequence:
ATGCGCGGCAACGACGAGCGCCGGAGTCCGGCGGAAGGTGCCAGTACGGAAGCGGAAGTGTCCGCCTTCGAA
GCTGTGCTGATCGACCCGATGCAGGAGAAAGACGAGGAACTCAAGGACCGCCAGTTCGTCACCGCGCTGGCC
CGCGGGTTGGAATTGCTGCGCTGTTTCACACCACGGGAAAGCCTGCTGGGCAACCAGGAACTGGCGAAGAAG
ACCGGCCTGCCGAAGCCGACGGTGTCGCGTCTGACCCACACCCTGACCCGGCTGGGCTATCTGCGTCACCTG
CCGCATAGCGGCAAGTACCAGTTGGAAGTGGGCGTGATGTCGTTCGGCTACGCGATGCTCTCGAACCTGTCG
ATTCGCGCGCTCGCTCGCCCTTTGATGGAAGAGATGGCCGGCTACGCCAAGGCCGCGGTGGCCATGGCGGCC
CGTGACCGGCTGAGCATGGTCTACCTCGACGTGGTGCATGGCGAGGCCAACCTGACCATGCGTCGCCAGGTC
GGCAGCCACCTCTCGCTGCACCGCAGCGCGATCGGTCGGGCCTGCCTGGCGGCGATGCCGGAGGACGAGCGG
GAGTTCATCCTCGGGCACATCCGCAAGCGCCACCCGGAAGACTGGCCGGAAGTGCGCAAGGGGCTGGAGCGG
GCCTTCCGCGACTATGCCGACTACGGCTTCTGCCTGTCGCTCGGCGAGTGGCAACGCGACGTCAACGCGGTG
GGCGTGGCCTTGCACCACGAGAGCCATGGGCTGCTGGCGTTCAACTGCGGCGGGCCGAGTTTCCACCTCAAG
CGCGAGAAACTGGAGGACGACATCGGCCCGCGCCTGCTGCACATGGTCCACAACATCGAGGCCGCCACCCGC
TGA
Translation:
MRGNDERRSPAEGASTEAEVSAFEAVLIDPMQEKDEELKDRQFVTALARGLELLRCFTPRESLLGNQELAKK
TGLPKPTVSRLTHTLTRLGYLRHLPHSGKYQLEVGVMSFGYAMLSNLSIRALARPLMEEMAGYAKAAVAMAA
RDRLSMVYLDVVHGEANLTMRRQVGSHLSLHRSAIGRACLAAMPEDEREFILGHIRKRHPEDWPEVRKGLER
AFRDYADYGFCLSLGEWQRDVNAVGVALHHESHGLLAFNCGGPSFHLKREKLEDDIGPRLLHMVHNIEAATR
*
AnnotationID:2656GeneID:2648
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 15:03:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, IclR family
Cell Localization:()
Synonyms:PA1630
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414,smart00346
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL54264.1| (AE009735) TRANSCRIPTIONAL REGULATOR [Brucella melitensis 16M]
          Length = 284

 Score =  380 bits (975), Expect = e-105
 Identities = 191/282 (67%), Positives = 224/282 (79%), Gaps = 3/282 (1%)

>gb|AAN33425.1|AE014523_11 (AE014523) transcriptional regulator, IclR family [Brucella suis
           1330]
          Length = 284

 Score =  380 bits (975), Expect = e-105
 Identities = 191/282 (67%), Positives = 224/282 (79%), Gaps = 3/282 (1%)

>dbj|BAC53087.1| (AP005963) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 317

 Score =  234 bits (596), Expect = 6e-61
 Identities = 121/248 (48%), Positives = 162/248 (65%), Gaps = 1/248 (0%)






 
Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
CD-Length = 246 residues,  99.6% aligned
Score =  178 bits (453), Expect = 7e-46
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 3/246 (1%)

smart00346, HTH_ICLR, helix_turn_helix isocitrate lyase regulation
CD-Length = 91 residues,  98.9% aligned
Score = 75.2 bits (185), Expect = 9e-15
Identities = 32/90 (35%), Positives = 52/90 (57%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22444




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37262




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2648_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2648
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4365
                           PA1630_tr
                           translation of PA1630
                           288
                           99.99
                           99.99
                           0
                           1493.0
     

     
     
127544
                           gb|AAG05019.1|AE004590_10
                           (AE004590) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           288
                           99.99
                           99.99
                           0
                           1493.0
     

     
     
127545
                           gb|AAL54264.1|
                           (AE009735) TRANSCRIPTIONAL REGULATOR [Brucella melitensis 16M]
                           291
                           65.63
                           77.31
                           10
                           976.0
     

     
     
127546
                           gb|AAN33425.1|AE014523_11
                           (AE014523) transcriptional regulator, IclR family [Brucella suis 1330]
                           291
                           65.63
                           77.31
                           10
                           976.0
     

     
     
127550
                           emb|CAE35244.1|
                           (BX640451) putative IclR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           297
                           39.73
                           53.87
                           37
                           499.0
     

     






      

          
GC ORFID: 45650How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1630Glimmer Score: 

          
Start: 1084092Stop: 1084958

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1630 translation of PA1630Homolog Bit Score 579.0

          
Other Homologs:  t_PA1630 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGGCAACGACGAGCGCCGGAGTCCGGCGGAAGGTGCCAGTACGGAAGCGGAAGTGTCCGCCTTCGAA 
GCTGTGCTGATCGACCCGATGCAGGAGAAAGACGAGGAACTCAAGGACCGCCAGTTCGTCACCGCGCTGGCC 
CGCGGGTTGGAATTGCTGCGCTGTTTCACACCACGGGAAAGCCTGCTGGGCAACCAGGAACTGGCGAAGAAG 
ACCGGCCTGCCGAAGCCGACGGTGTCGCGTCTGACCCACACCCTGACCCGGCTGGGCTATCTGCGTCACCTG 
CCGCATAGCGGCAAGTACCAGTTGGAAGTGGGCGTGATGTCGTTCGGCTACGCGATGCTCTCGAACCTGTCG 
ATTCGCGCGCTCGCTCGCCCTTTGATGGAAGAGATGGCCGGCTACGCCAAGGCCGCGGTGGCCATGGCGGCC 
CGTGACCGGCTGAGCATGGTCTACCTCGACGTGGTGCATGGCGAGGCCAACCTGACCATGCGTCGCCAGGTC 
GGCAGCCACCTCTCGCTGCACCGCAGCGCGATCGGTCGGGCCTGCCTGGCGGCGATGCCGGAGGACGAGCGG 
GAGTTCATCCTCGGGCACATCCGCAAGCGCCACCCGGAAGACTGGCCGGAAGTGCGCAAGGGGCTGGAGCGG 
GCCTTCCGCGACTATGCCGACTACGGCTTCTGCCTGTCGCTCGGCGAGTGGCAACGCGACGTCAACGCGGTG 
GGCGTGGCCTTGCACCACGAGAGCCATGGGCTGCTGGCGTTCAACTGCGGCGGGCCGAGTTTCCACCTCAAG 
CGCGAGAAACTGGAGGACGACATCGGCCCGCGCCTGCTGCACATGGTCCACAACATCGAGGCCGCCACCCGC 
TGA