ViewGene
Locus Name:
GeneID:
Location:

GeneID:2647
TrivialName: PA14_02730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02730
PAO1 Ortholog Locus:PA0223
Sequence Length:882
Protein Length:293
Start: 243945
Stop: 243064
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03612.1|AE004460_5 (AE004460) probable dihydrodipicolinate synthetase [Pseudomonas aeruginosa PAO1]
Identities = 292/293 (99%), Positives = 292/293 (99%)
Sequence:
ATGTCCGCATCCATCCACGGCATCATCGGCTACACCATCACCCCCTTCGCCGCCGACGGCGGTCTCGACCTG
CCGGCCCTCGGCCGCTCCATCGAGCGCCTGATCGACGGCGGCGTGCATGCCATCGCCCCGCTCGGCAGCACC
GGCGAAGGCGCCTACCTGAGCGATCCGGAATGGGACGAGGTGGTCGACTTCACCCTGAAGACCGTCGCCCAT
CGCGTGCCGACCATCGTCAGCGTCTCCGACCTGACCACCGCCAAGACCGTGCGCCGCGCGCAGTTCGCCGAA
TCCCTCGGCGCCGAGGCGGTGATGGTCCTGCCGATCTCCTACTGGAAGCTCAACGAGGCGGAAGTGTTCCAG
CACTACCGCGCGGTGGGCGAAGCCATCGGCGTGCCGGTGATGCTCTACAACAACCCGGGCACCAGCGGCATC
GACATGTCGGTGGAACTGATCCTGCGCATCGTCCGCGAAGTGGACAACGTGACCATGGTCAAGGAGAGCACC
GGCGACATCCAGCGCATGCACAAGCTGCGCCTGCTCGGCGAAGGCCGGGTGCCCTTCTACAACGGCTGCAAC
CCGCTGGCGCTGGAGGCCTTCGTGGCCGGCGCGAAAGGCTGGTGCAGCGCCGCGCCGAACCTGATCCCGACG
CTCAACGGCCAGCTCTACCAGGCGGTGCTCGACGGCGACCTGGAGAAGGCCCGCACGCTGTTCTACCGGCAG
TTGCCGCTGCTCGACTTCATCCTCCGCCGGGGCCTGCCGACCACCATCAAGGCCGGCCTGGGCCTCTCCGGC
CTGGAGGTGGGGGCGCCGCGCCTTCCGGTGCAGGCGCTGGATACCGAGGGCTGTCGGTATCTGCAGGGGTTG
TTGGAAGAGCTGCGCTGA
Translation:
MSASIHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH
RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGI
DMSVELILRIVREVDNVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNPLALEAFVAGAKGWCSAAPNLIPT
LNGQLYQAVLDGDLEKARTLFYRQLPLLDFILRRGLPTTIKAGLGLSGLEVGAPRLPVQALDTEGCRYLQGL
LEELR*
AnnotationID:2655GeneID:2647
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 13:01:54
Gene Name:
Confidence Code:3
GeneProduct:putative dihydrodipicolinate synthetase
Cell Localization:()
Synonyms:PA0223
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0329,pfam00701
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
[Amino acid transport and metabolism / 
Cell envelope biogenesis, outer membrane]
CD-Length = 299 residues,  95.7% aligned
Score =  264 bits (675), Expect = 1e-71


pfam00701, DHDPS, Dihydrodipicolinate synthetase family. 
CD-Length = 289 residues,  98.6% aligned
Score =  196 bits (499), Expect = 3e-51
Identities = 96/286 (33%), Positives = 150/286 (52%), Gaps = 1/286 (0%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22442




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33583




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2647_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2647
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4364
                           PA0223_tr
                           translation of PA0223
                           293
                           99.65
                           99.65
                           0
                           1494.0
     

     
     
127541
                           gb|AAG03612.1|AE004460_5
                           (AE004460) probable dihydrodipicolinate synthetase [Pseudomonas aeruginosa PAO1]
                           293
                           99.65
                           99.65
                           0
                           1494.0
     

     
     
127542
                           gb|AAN67650.1|AE016395_1
                           (AE016781) dihydrodipicolinate synthase, putative [Pseudomonas putida KT2440]
                           295
                           69.49
                           80.00
                           2
                           1032.0
     

     
     
127543
                           emb|CAC40969.1|
                           (AJ314791) hypothetical protein [Vibrio sp. CH-291]
                           297
                           51.85
                           69.02
                           6
                           799.0
     

     






      

          
GC ORFID: 45649How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0223Glimmer Score: 

          
Start: 6045286Stop: 6044405

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0223 translation of PA0223Homolog Bit Score 580.0

          
Other Homologs:  t_PA0223 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCATCCATCCACGGCATCATCGGCTACACCATCACCCCCTTCGCCGCCGACGGCGGTCTCGACCTG 
CCGGCCCTCGGCCGCTCCATCGAGCGCCTGATCGACGGCGGCGTGCATGCCATCGCCCCGCTCGGCAGCACC 
GGCGAAGGCGCCTACCTGAGCGATCCGGAATGGGACGAGGTGGTCGACTTCACCCTGAAGACCGTCGCCCAT 
CGCGTGCCGACCATCGTCAGCGTCTCCGACCTGACCACCGCCAAGACCGTGCGCCGCGCGCAGTTCGCCGAA 
TCCCTCGGCGCCGAGGCGGTGATGGTCCTGCCGATCTCCTACTGGAAGCTCAACGAGGCGGAAGTGTTCCAG 
CACTACCGCGCGGTGGGCGAAGCCATCGGCGTGCCGGTGATGCTCTACAACAACCCGGGCACCAGCGGCATC 
GACATGTCGGTGGAACTGATCCTGCGCATCGTCCGCGAAGTGGACAACGTGACCATGGTCAAGGAGAGCACC 
GGCGACATCCAGCGCATGCACAAGCTGCGCCTGCTCGGCGAAGGCCGGGTGCCCTTCTACAACGGCTGCAAC 
CCGCTGGCGCTGGAGGCCTTCGTGGCCGGCGCGAAAGGCTGGTGCAGCGCCGCGCCGAACCTGATCCCGACG 
CTCAACGGCCAGCTCTACCAGGCGGTGCTCGACGGCGACCTGGAGAAGGCCCGCACGCTGTTCTACCGGCAG 
TTGCCGCTGCTCGACTTCATCCTCCGCCGGGGCCTGCCGACCACCATCAAGGCCGGCCTGGGCCTCTCCGGC 
CTGGAGGTGGGGGCGCCGCGCCTTCCGGTGCAGGCGCTGGATACCGAGGGCTGTCGGTATCTGCAGGGGTTG 
TTGGAAGAGCTGCGCTGA