ViewGene
Locus Name:
GeneID:
Location:

GeneID:2646
TrivialName: PA14_00690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00690
PAO1 Ortholog Locus:PA0057
Sequence Length:888
Protein Length:295
Start: 69374
Stop: 70261
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03447.1|AE004445_8 (AE004445) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 295/295 (100%), Positives = 295/295 (100%)
Sequence:
ATGTCGCGCCATGGATTGCTTCGTTCCCTGTTCGCCGCCGCCGCCCTGCTGGGTGCCGCCGGCGTCTTCGCC
GCCAGCGCCGAACCGCTGCGGCTGGAGGTCTACAACCCCGGCGAGAAGGCGATCTTCGCCGTGTCCTCGGAA
CTGCTGGTGGGCCAGCGCGAGGCGATGCTGATCGACGCGCAGTTCTCCCGCGCCGACGCCGAGCAACTGGTC
AAGCGTATCCAGGCCAGCGGCAAGACCCTCAGCACTATCTACATCAGCCACGGCGACCCGGACTTCTACTTC
GGCCTCGACGTGCTGAAGGCCGCCTTCCCCGAGGCGAAGATCCTCGCGACGGCGCAGACCGTCGCACACATC
CAGGCGACCAAGGACGCCAAGCTGGCCTACTGGGGGCCGATCCTCAAGGACAACGCGCCGACGTCGCTGGTG
GTGCCGGAGCCGCTGAAGGGCGACCAGTTGAAGCTGGAAGGCCATGCCCTGAAGGTGGTCGACCTGAAGGGG
CCGAGCCCGGACCGCACGGTGCTGTGGATTCCGTCGCTGAAGACGGTGGTTGGTGGCGTGCTGGTGGAATCC
GGTTCGCACGTCTGGACCGCCGATACCCAGACCCAGGCCTCGCGCCAGGCCTGGGTGGCGATGCTCGACCGG
ATCGAGGCGCTGCAACCGCGGCGCGTGGTGCCCGGCCATTTCACCGGCGAGGAGCCGAAGGGCCTGGACGGC
GTGCGCTTCACCCGAGACTACCTGAAGGCCCTGGAAGCCGAACTGCCCAAGGCCAGGGATTCCGCCGCGCTG
GTCGAGGCGATGAAGCGCCGCTACCCGAACCTGCCGGGCGAGGAAGGCCTGGAGCTGAGCGCCAAGGTGCTC
AAGGGCGAGATGCAGTGGCCCTGA
Translation:
MSRHGLLRSLFAAAALLGAAGVFAASAEPLRLEVYNPGEKAIFAVSSELLVGQREAMLIDAQFSRADAEQLV
KRIQASGKTLSTIYISHGDPDFYFGLDVLKAAFPEAKILATAQTVAHIQATKDAKLAYWGPILKDNAPTSLV
VPEPLKGDQLKLEGHALKVVDLKGPSPDRTVLWIPSLKTVVGGVLVESGSHVWTADTQTQASRQAWVAMLDR
IEALQPRRVVPGHFTGEEPKGLDGVRFTRDYLKALEAELPKARDSAALVEAMKRRYPNLPGEEGLELSAKVL
KGEMQWP*
AnnotationID:2654GeneID:2646
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 16:04:50
Gene Name:
Confidence Code:3
GeneProduct:putative metallo-beta-lactamase
Cell Localization:()
Synonyms:PA0057
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0491,pfam00753
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC89649.1| (AJ414144) putative exported protein [Yersinia pestis CO92]
          Length = 295

 Score =  351 bits (900), Expect = 3e-96
 Identities = 168/290 (57%), Positives = 217/290 (74%), Gaps = 1/290 (0%)

>gb|AAO55955.1| (AE016864) metallo-beta-lactamase superfamily protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 296

 Score =  338 bits (868), Expect = 2e-92
 Identities = 167/295 (56%), Positives = 217/295 (73%)

>gb|AAO08273.1|AE016813_25 (AE016813) Zn-dependent hydrolase [Vibrio vulnificus CMCP6]
          Length = 281

 Score =  261 bits (666), Expect = 4e-69
 Identities = 135/280 (48%), Positives = 183/280 (65%), Gaps = 8/280 (2%)






 
Structural Features:
COG0491, GloB, Zn-dependent hydrolases, including glyoxylases
CD-Length = 252 residues,  83.7% aligned
Score = 95.7 bits (236), Expect = 7e-21
Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 4/213 (1%)

pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
CD-Length = 190 residues,  97.4% aligned
Score = 73.4 bits (178), Expect = 3e-14
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 10/190 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5295




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22440




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33412




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2646_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2646
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4363
                           PA0057_tr
                           translation of PA0057
                           295
                           99.99
                           99.99
                           0
                           1494.0
     

     
     
127528
                           gb|AAG03447.1|AE004445_8
                           (AE004445) hypothetical protein PA0057 [Pseudomonas aeruginosa PAO1]
                           295
                           99.99
                           99.99
                           0
                           1494.0
     

     
     
127530
                           emb|CAC89649.1|
                           (AJ414144) putative exported protein [Yersinia pestis CO92]
                           296
                           57.09
                           73.64
                           2
                           901.0
     

     
     
127531
                           gb|AAO55955.1|
                           (AE016864) metallo-beta-lactamase superfamily protein [Pseudomonas syringae pv. tomato str. DC3000]
                           296
                           56.41
                           73.31
                           1
                           868.0
     

     
     
127534
                           emb|CAE13482.1|
                           (BX571862) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           296
                           54.72
                           70.27
                           3
                           838.0
     

     






      

          
GC ORFID: 45648How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0057Glimmer Score: 

          
Start: 5870711Stop: 5871598

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0057 translation of PA0057Homolog Bit Score 580.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene268 (ORF: BLASTX 358.0), t_PA0057 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCGCCATGGATTGCTTCGTTCCCTGTTCGCCGCCGCCGCCCTGCTGGGTGCCGCCGGCGTCTTCGCC 
GCCAGCGCCGAACCGCTGCGGCTGGAGGTCTACAACCCCGGCGAGAAGGCGATCTTCGCCGTGTCCTCGGAA 
CTGCTGGTGGGCCAGCGCGAGGCGATGCTGATCGACGCGCAGTTCTCCCGCGCCGACGCCGAGCAACTGGTC 
AAGCGTATCCAGGCCAGCGGCAAGACCCTCAGCACTATCTACATCAGCCACGGCGACCCGGACTTCTACTTC 
GGCCTCGACGTGCTGAAGGCCGCCTTCCCCGAGGCGAAGATCCTCGCGACGGCGCAGACCGTCGCACACATC 
CAGGCGACCAAGGACGCCAAGCTGGCCTACTGGGGGCCGATCCTCAAGGACAACGCGCCGACGTCGCTGGTG 
GTGCCGGAGCCGCTGAAGGGCGACCAGTTGAAGCTGGAAGGCCATGCCCTGAAGGTGGTCGACCTGAAGGGG 
CCGAGCCCGGACCGCACGGTGCTGTGGATTCCGTCGCTGAAGACGGTGGTTGGTGGCGTGCTGGTGGAATCC 
GGTTCGCACGTCTGGACCGCCGATACCCAGACCCAGGCCTCGCGCCAGGCCTGGGTGGCGATGCTCGACCGG 
ATCGAGGCGCTGCAACCGCGGCGCGTGGTGCCCGGCCATTTCACCGGCGAGGAGCCGAAGGGCCTGGACGGC 
GTGCGCTTCACCCGAGACTACCTGAAGGCCCTGGAAGCCGAACTGCCCAAGGCCAGGGATTCCGCCGCGCTG 
GTCGAGGCGATGAAGCGCCGCTACCCGAACCTGCCGGGCGAGGAAGGCCTGGAGCTGAGCGCCAAGGTGCTC 
AAGGGCGAGATGCAGTGGCCCTGA