ViewGene
Locus Name:
GeneID:
Location:

GeneID:2645
TrivialName: PA14_72780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72780
PAO1 Ortholog Locus:PA5516
Sequence Length:867
Protein Length:288
Start: 6481814
Stop: 6482680
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08901.1|AE004964_4 (AE004964) pyridoxamine kinase [Pseudomonas aeruginosa PAO1]
Identities = 286/288 (99%), Positives = 287/288 (99%)
Sequence:
ATGCCACGTACGCCCCACCTGCTCGCCATCCAGTCCCATGTGGTCTTCGGCCACGCCGGCAATGCCGCGGCG
GTGTTCCCGATGCAGCGCATCGGAATCAACGTCTGGCCGTTGAACACGGTGCAATTCTCCAACCACACCCAG
TACGGTCAATGGACCGGGCAGGTGCTGCCGCCGGAGCAGATTCCGGCTCTGGTGGACGGTATTGCCGGCATC
GGCGAACTGGGCAACTGCGACGCAGTGCTGTCCGGATATCTCGGCAGCGCCGCCCAGGGCCGCGCCATTCTC
GACGTGGTGGCACGGATCAAACAGGCCAACCCTCGGGCGTTGTACCTCTGCGACCCGGTCATGGGCCACCCG
GAAAAAGGCTGCATCGTGGCCCCGGAAGTCAGCGACTTCCTGCTGGAAGAAGCCGCCGCGGTCGCCGACTAC
CTGTGCCCCAACCAGTTGGAGCTGGACAGCTTCTGCGACCGCCAGCCGAACTCCCTCGCCGACTGCGTGGAA
ATGGCACGGAGCCTGCTGGCACGCGGTCCCAGGGCAATCCTGGTAAAGCACCTGAACTATCCGGGCAAGGCC
GGCGACACCTTCGAGATGCTGCTGGTGGCCGCCGATCAGGCCTGGCACCTGCAACGCCCGCTGCTGGCCTTC
CCGCGGCAACCGGTCGGAGTCGGCGACCTGGCCTCGGGGCTGTTCCTCTCTCGCCTGCTGCTCGGCGACGAC
TTGCGTAACGCCTTCGAATTCGCCGGCGCCGCGGTCCATGAAGTGCTGCTGGAAACCCAGGCCTGCGGCAGC
TACGAGCTAGAGCTGGTGCGGGCGCAGGATCGGATCGCACACCCAAGGGTTCGTTTCGACGCAGTGCGCCTT
TAG
Translation:
MPRTPHLLAIQSHVVFGHAGNAAAVFPMQRIGINVWPLNTVQFSNHTQYGQWTGQVLPPEQIPALVDGIAGI
GELGNCDAVLSGYLGSAAQGRAILDVVARIKQANPRALYLCDPVMGHPEKGCIVAPEVSDFLLEEAAAVADY
LCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQAWHLQRPLLAF
PRQPVGVGDLASGLFLSRLLLGDDLRNAFEFAGAAVHEVLLETQACGSYELELVRAQDRIAHPRVRFDAVRL
*
AnnotationID:2653GeneID:2645
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:43
Gene Name:pdxY
Confidence Code:2
GeneProduct:pyridoxamine kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2240
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58940.1| (AE016876) pyridoxal kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 288

 Score =  504 bits (1297), Expect = e-142
 Identities = 245/288 (85%), Positives = 266/288 (92%)

>gb|AAN70922.1|AE016736_5 (AE016794) pyridoxal kinase [Pseudomonas putida KT2440]
          Length = 290

 Score =  471 bits (1213), Expect = e-132
 Identities = 229/285 (80%), Positives = 250/285 (87%)

>gb|AAG56625.1|AE005387_3 (AE005387) pyridoxal kinase 2 / pyridoxine kinase [Escherichia coli
           O157:H7 EDL933]
          Length = 287

 Score =  335 bits (859), Expect = 2e-91
 Identities = 164/284 (57%), Positives = 209/284 (73%), Gaps = 1/284 (0%)








 
Structural Features:
COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase 
[Coenzyme metabolism]
CD-Length = 281 residues,  99.6% aligned
Score =  349 bits (898), Expect = 2e-97
Identities = 150/284 (52%), Positives = 192/284 (67%), Gaps = 4/284 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5293




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22438




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33305




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2645_cdd.html


    		




 
URL:

















    ReferenceID:35593




  
Author/Investigator(s):
        Yang Y, Tsui HC, Man TK, Winkler ME.





  
Title:
        Identification and function of the pdxY gene, which encodes a novel pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate biosynthesis in Escherichia coli K-12.




  
PubMed:
        9537380


MedLine:
        




    
Source:
J Bacteriol. 1998 Apr;180(7):1814-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9537380









           
Homologs By Global Alignment 

           

       



     
Gene ID:2645
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4362
                           PA5516_tr
                           translation of PA5516
                           288
                           99.30
                           99.65
                           0
                           1494.0
     

     
     
127505
                           gb|AAG08901.1|AE004964_4
                           (AE004964) pyridoxamine kinase [Pseudomonas aeruginosa PAO1]
                           288
                           99.30
                           99.65
                           0
                           1494.0
     

     
     
127506
                           gb|AAO58940.1|
                           (AE016876) pyridoxal kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           288
                           85.06
                           92.36
                           0
                           1297.0
     

     
     
127507
                           gb|AAN70922.1|AE016736_5
                           (AE016794) pyridoxal kinase [Pseudomonas putida KT2440]
                           290
                           79.31
                           86.55
                           2
                           1213.0
     

     
     
127510
                           emb|CAC91173.1|
                           (AJ414152) pyridoxamine kinase [Yersinia pestis CO92]
                           289
                           58.47
                           71.28
                           4
                           863.0
     

     






      

          
GC ORFID: 45647How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5516Glimmer Score: 

          
Start: 5745503Stop: 5746369

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5516 translation of PA5516Homolog Bit Score 580.0

          
Other Homologs:  t_PA5516 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACGTACGCCCCACCTGCTCGCCATCCAGTCCCATGTGGTCTTCGGCCACGCCGGCAATGCCGCGGCG 
GTGTTCCCGATGCAGCGCATCGGAATCAACGTCTGGCCGTTGAACACGGTGCAATTCTCCAACCACACCCAG 
TACGGTCAATGGACCGGGCAGGTGCTGCCGCCGGAGCAGATTCCGGCTCTGGTGGACGGTATTGCCGGCATC 
GGCGAACTGGGCAACTGCGACGCAGTGCTGTCCGGATATCTCGGCAGCGCCGCCCAGGGCCGCGCCATTCTC 
GACGTGGTGGCACGGATCAAACAGGCCAACCCTCGGGCGTTGTACCTCTGCGACCCGGTCATGGGCCACCCG 
GAAAAAGGCTGCATCGTGGCCCCGGAAGTCAGCGACTTCCTGCTGGAAGAAGCCGCCGCGGTCGCCGACTAC 
CTGTGCCCCAACCAGTTGGAGCTGGACAGCTTCTGCGACCGCCAGCCGAACTCCCTCGCCGACTGCGTGGAA 
ATGGCACGGAGCCTGCTGGCACGCGGTCCCAGGGCAATCCTGGTAAAGCACCTGAACTATCCGGGCAAGGCC 
GGCGACACCTTCGAGATGCTGCTGGTGGCCGCCGATCAGGCCTGGCACCTGCAACGCCCGCTGCTGGCCTTC 
CCGCGGCAACCGGTCGGAGTCGGCGACCTGGCCTCGGGGCTGTTCCTCTCTCGCCTGCTGCTCGGCGACGAC 
TTGCGTAACGCCTTCGAATTCGCCGGCGCCGCGGTCCATGAAGTGCTGCTGGAAACCCAGGCCTGCGGCAGC 
TACGAGCTAGAGCTGGTGCGGGCGCAGGATCGGATCGCACACCCAAGGGTTCGTTTCGACGCAGTGCGCCTT 
TAG