ViewGene
Locus Name:
GeneID:
Location:

GeneID:2644
TrivialName: PA14_65500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65500
PAO1 Ortholog Locus:PA4957
Sequence Length:870
Protein Length:289
Start: 5833808
Stop: 5834677
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08342.1|AE004908_8 (AE004908) phosphatidylserine decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 287/289 (99%), Positives = 289/289 (100%)
Sequence:
ATGTCGTTCAAAGATCGTCTGTTCATCTGCAGCCAGTACCTGCTGCCGCACCACCTGCTGTCCCGGCTGATC
GGCTTCGCCGCCGACTGCCGGGCGACCTGGTTCAAGGACCGCCTGATCGCCTGGTTCGCCCGGCGCTACCAG
GTCGACATGCGCGAAGCACAGGTCGAGGACCTGCAGGCCTATGAACATTTCAATGCCTTCTTCACCCGCGCC
CTGAAGGATGGCGCCCGCCCGCTGGCCCAGGAGCCCGGCGCGGTGCTCTGCCCGGCCGATGGCGCGATCAGC
CAGCTCGGCCCGATCGAGCACGGGCGGATCTTCCAGGCCAAAGGCCACAGCTACAGCCTGGCCGAACTGCTC
GGCGGCGACGCCGAACTGGCCGCGCCCTTCATGGGCGGCGACTTCGCCACCGTCTACCTGTCCCCCCGGGAC
TACCACCGCGTGCACATGCCGCTGGCCGGCACCCTGCGCGAGATGGTCTACGTTCCCGGCCGGCTGTTCTCG
GTGAACCAGACCACCGCGGAAAACGTTCCCGAGCTGTTCGCCCGCAACGAGCGGGTGGTCTGCCTGTTCGAC
ACCGAGCGCGGTCCGATGGCCGTGGTGCTGGTGGGCGCGATGATCGTGGCCTCCATCGAAACCGTCTGGGCC
GGCCTGGTTACGCCGCCGAAGCGCGAACTGAAGACCTTCCGCTACGACGAAGCCGCCCGCGCGCCGATCCGC
CTGGAAAAAGGCGCCGAGCTGGGTCGCTTCAAGCTGGGCTCCACCGCCATCGTCCTGTTCGGCCCGCAGCAG
GTCGCGTTCAACGACGGCCTCGGGGCAGCGAGCCCGGTGCGCATGGGCGAGTGCCTGGCCCTGCCGAAACAG
GCCTGA
Translation:
MSFKDRLFICSQYLLPHHLLSRLIGFAADCRATWFKDRLIAWFARRYQVDMREAQVEDLQAYEHFNAFFTRA
LKDGARPLAQEPGAVLCPADGAISQLGPIEHGRIFQAKGHSYSLAELLGGDAELAAPFMGGDFATVYLSPRD
YHRVHMPLAGTLREMVYVPGRLFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASIETVWA
GLVTPPKRELKTFRYDEAARAPIRLEKGAELGRFKLGSTAIVLFGPQQVAFNDGLGAASPVRMGECLALPKQ
A*
AnnotationID:2652GeneID:2644
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 08:08:20
Gene Name:psd
Confidence Code:2
GeneProduct:phosphatidylserine decarboxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0688,pfam02666
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:4.1.1.65
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70475.1|AE016689_3 (AE016792) phosphatidylserine decarboxylase [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  486 bits (1250), Expect = e-137
 Identities = 238/286 (83%), Positives = 255/286 (89%)

>gb|AAO58383.1| (AE016873) rhodanese domain protein/phosphatidylserine
           decarboxylase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 613

 Score =  475 bits (1223), Expect = e-133
 Identities = 234/288 (81%), Positives = 255/288 (88%)

>emb|CAE33386.1| (BX640445) phosphatidylserine decarboxylase proenzyme [Bordetella
           bronchiseptica]
          Length = 297

 Score =  427 bits (1098), Expect = e-119
 Identities = 214/286 (74%), Positives = 239/286 (83%)






 
Structural Features:
COG0688, Psd, Phosphatidylserine decarboxylase [Lipid metabolism]
CD-Length = 239 residues, 100.0% aligned
Score =  218 bits (558), Expect = 4e-58
Identities = 95/278 (34%), Positives = 125/278 (44%), Gaps = 43/278 (15%)

pfam02666, PS_Dcarbxylase, Phosphatidylserine decarboxylase.
CD-Length = 199 residues,  99.5% aligned
Score =  205 bits (524), Expect = 4e-54
Identities = 89/221 (40%), Positives = 119/221 (53%), Gaps = 22/221 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5291




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22436




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35100




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2644_cdd.html


    		




 
URL:

















    ReferenceID:35889




  
Author/Investigator(s):
        Matsumoto K, Okada M, Horikoshi Y, Matsuzaki H, Kishi T, Itaya M, Shibuya I.





  
Title:
        Cloning, sequencing, and disruption of the Bacillus subtilis psd gene coding for phosphatidylserine decarboxylase.




  
PubMed:
        9422599


MedLine:
        




    
Source:
J Bacteriol. 1998 Jan;180(1):100-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9422599

















    ReferenceID:35890




  
Author/Investigator(s):
        Li QX, Dowhan W.





  
Title:
        Structural characterization of Escherichia coli phosphatidylserine decarboxylase.




  
PubMed:
        3042771


MedLine:
        




    
Source:
J Biol Chem. 1988 Aug 15;263(23):11516-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3042771









           
Homologs By Global Alignment 

           

       



     
Gene ID:2644
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4361
                           PA4957_tr
                           translation of PA4957
                           289
                           99.30
                           99.99
                           0
                           1496.0
     

     
     
127470
                           gb|AAG08342.1|AE004908_8
                           (AE004908) phosphatidylserine decarboxylase [Pseudomonas aeruginosa PAO1]
                           289
                           99.30
                           99.99
                           0
                           1496.0
     

     
     
127471
                           gb|AAN70475.1|AE016689_3
                           (AE016792) phosphatidylserine decarboxylase [Pseudomonas putida KT2440]
                           289
                           82.35
                           88.23
                           2
                           1250.0
     

     
     
127473
                           emb|CAE33386.1|
                           (BX640445) phosphatidylserine decarboxylase proenzyme [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           297
                           72.05
                           80.47
                           8
                           1097.0
     

     
     
127475
                           emb|CAE41590.1|
                           (BX640414) phosphatidylserine decarboxylase proenzyme [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           297
                           71.71
                           80.13
                           8
                           1093.0
     

     






      

          
GC ORFID: 45646How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4957Glimmer Score: 

          
Start: 5097489Stop: 5098358

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4957 translation of PA4957Homolog Bit Score 580.0

          
Other Homologs:  t_PA4957 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTTCAAAGATCGTCTGTTCATCTGCAGCCAGTACCTGCTGCCGCACCACCTGCTGTCCCGGCTGATC 
GGCTTCGCCGCCGACTGCCGGGCGACCTGGTTCAAGGACCGCCTGATCGCCTGGTTCGCCCGGCGCTACCAG 
GTCGACATGCGCGAAGCACAGGTCGAGGACCTGCAGGCCTATGAACATTTCAATGCCTTCTTCACCCGCGCC 
CTGAAGGATGGCGCCCGCCCGCTGGCCCAGGAGCCCGGCGCGGTGCTCTGCCCGGCCGATGGCGCGATCAGC 
CAGCTCGGCCCGATCGAGCACGGGCGGATCTTCCAGGCCAAAGGCCACAGCTACAGCCTGGCCGAACTGCTC 
GGCGGCGACGCCGAACTGGCCGCGCCCTTCATGGGCGGCGACTTCGCCACCGTCTACCTGTCCCCCCGGGAC 
TACCACCGCGTGCACATGCCGCTGGCCGGCACCCTGCGCGAGATGGTCTACGTTCCCGGCCGGCTGTTCTCG 
GTGAACCAGACCACCGCGGAAAACGTTCCCGAGCTGTTCGCCCGCAACGAGCGGGTGGTCTGCCTGTTCGAC 
ACCGAGCGCGGTCCGATGGCCGTGGTGCTGGTGGGCGCGATGATCGTGGCCTCCATCGAAACCGTCTGGGCC 
GGCCTGGTTACGCCGCCGAAGCGCGAACTGAAGACCTTCCGCTACGACGAAGCCGCCCGCGCGCCGATCCGC 
CTGGAAAAAGGCGCCGAGCTGGGTCGCTTCAAGCTGGGCTCCACCGCCATCGTCCTGTTCGGCCCGCAGCAG 
GTCGCGTTCAACGACGGCCTCGGGGCAGCGAGCCCGGTGCGCATGGGCGAGTGCCTGGCCCTGCCGAAACAG 
GCCTGA