ViewGene
Locus Name:
GeneID:
Location:

GeneID:2643
TrivialName: PA14_64780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64780
PAO1 Ortholog Locus:PA4902
Sequence Length:897
Protein Length:298
Start: 5771833
Stop: 5772729
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08287.1|AE004903_5 (AE004903) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 297/298 (99%), Positives = 298/298 (100%)
Sequence:
ATGAGTCCGATCGATCTCAACCTGATCCGCACCTTCGTCACCCTCTACGAAGCGGGCAGCGTGACCCTCGCC
GCGGAGCGCCTGTTCGTCACCCAGCCATCGGTGAGCTACGCCCTGGCGCGCCTGCGCGAACTGTTCGACGAC
GCGTTGTTCACCCGCACCCGCGACGGCATCCAGCCGACCTTCGTCGCCGAGCAGCTCTACGGCACCTTCCGC
GAGTCGCTGACGCGCATCGAGGGCGCGGTACAGAGCGTTCGCCACTTCGATCCGGCGACCACCGAGCGACGT
TTCCGCATCGCCCTCACCGATCTCGGCGAGGTGGGTTTCCTCTCGCTGATCCTCGAACGCCTGACCCGCGAC
GCGCCGTTCGCCGAAGTGGAAGTGCTGCCGCTGCAGGTGGACGAGGTCGGCGCCTGGCTGAGCAGCGCCAAG
GTCGACGCGGCGATCTGCCGCCAGCCGGTGCCCGGCGCGCGCAGCCAGCGGGTCCTGCACGAGCGCTACGTG
TGCCTGCTCAGCGACCGCCACCCACGGATCGGCGACAGCCTGAGCCTGGAGCAGTACCTGGCCGAGCGGCAC
ATCGTGGTGACCCGCACCTCCGGCCACGGCATCGCCGAGGACGTGCTCGAGGCCATGCAGGTGCGGCGCCGC
ATCAGCCTGCGGGTGCCGCACTTCTCGGTGCTGCCGAAGATCATTCCCGGTACCGAGCTGCTGACCATCCTG
CCGGCGCAGATCGCCTATCGCTTCGTCGCCGAAGGCGGCATGCGCATGCTCGAACTGCCCTTCACCCTGCCG
CCGTTCGACGTCTCCCTGCACTGGCACGAGAGCAGCGAACGCTCGGCGGCGCTGAACTGGTTCCGCACCACC
ATCGCCGAGGCGATCATCGCCGCCCAACGCTGA
Translation:
MSPIDLNLIRTFVTLYEAGSVTLAAERLFVTQPSVSYALARLRELFDDALFTRTRDGIQPTFVAEQLYGTFR
ESLTRIEGAVQSVRHFDPATTERRFRIALTDLGEVGFLSLILERLTRDAPFAEVEVLPLQVDEVGAWLSSAK
VDAAICRQPVPGARSQRVLHERYVCLLSDRHPRIGDSLSLEQYLAERHIVVTRTSGHGIAEDVLEAMQVRRR
ISLRVPHFSVLPKIIPGTELLTILPAQIAYRFVAEGGMRMLELPFTLPPFDVSLHWHESSERSAALNWFRTT
IAEAIIAAQR*
AnnotationID:2651GeneID:2643
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:35
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-type transcriptional regulator
Cell Localization:()
Synonyms:PA4902
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466,pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL27559.1|AF425229_4 (AF425229) putative LysR-type regulator [Pseudomonas putida]
          Length = 304

 Score =  452 bits (1164), Expect = e-127
 Identities = 228/297 (76%), Positives = 259/297 (87%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  117 bits (293), Expect = 2e-27
Identities = 76/298 (25%), Positives = 117/298 (39%), Gaps = 5/298 (1%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  97.1% aligned
Score = 87.4 bits (216), Expect = 2e-18
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 4/203 (1%)

pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
CD-Length = 60 residues, 100.0% aligned
Score = 62.4 bits (152), Expect = 6e-11
Identities = 26/60 (43%), Positives = 34/60 (56%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5289




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22434




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35125




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2643_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2643
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4360
                           PA4902_tr
                           translation of PA4902
                           298
                           99.66
                           99.99
                           0
                           1496.0
     

     
     
127468
                           gb|AAG08287.1|AE004903_5
                           (AE004903) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           298
                           99.66
                           99.99
                           0
                           1496.0
     

     
     
127469
                           gb|AAL27559.1|AF425229_4
                           (AF425229) putative LysR-type regulator [Pseudomonas putida]
                           304
                           75.00
                           85.19
                           6
                           1163.0
     

     






      

          
GC ORFID: 45645How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4902Glimmer Score: 

          
Start: 5035514Stop: 5036410

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4902 translation of PA4902Homolog Bit Score 580.0

          
Other Homologs:  t_PA4902 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCCGATCGATCTCAACCTGATCCGCACCTTCGTCACCCTCTACGAAGCGGGCAGCGTGACCCTCGCC 
GCGGAGCGCCTGTTCGTCACCCAGCCATCGGTGAGCTACGCCCTGGCGCGCCTGCGCGAACTGTTCGACGAC 
GCGTTGTTCACCCGCACCCGCGACGGCATCCAGCCGACCTTCGTCGCCGAGCAGCTCTACGGCACCTTCCGC 
GAGTCGCTGACGCGCATCGAGGGCGCGGTACAGAGCGTTCGCCACTTCGATCCGGCGACCACCGAGCGACGT 
TTCCGCATCGCCCTCACCGATCTCGGCGAGGTGGGTTTCCTCTCGCTGATCCTCGAACGCCTGACCCGCGAC 
GCGCCGTTCGCCGAAGTGGAAGTGCTGCCGCTGCAGGTGGACGAGGTCGGCGCCTGGCTGAGCAGCGCCAAG 
GTCGACGCGGCGATCTGCCGCCAGCCGGTGCCCGGCGCGCGCAGCCAGCGGGTCCTGCACGAGCGCTACGTG 
TGCCTGCTCAGCGACCGCCACCCACGGATCGGCGACAGCCTGAGCCTGGAGCAGTACCTGGCCGAGCGGCAC 
ATCGTGGTGACCCGCACCTCCGGCCACGGCATCGCCGAGGACGTGCTCGAGGCCATGCAGGTGCGGCGCCGC 
ATCAGCCTGCGGGTGCCGCACTTCTCGGTGCTGCCGAAGATCATTCCCGGTACCGAGCTGCTGACCATCCTG 
CCGGCGCAGATCGCCTATCGCTTCGTCGCCGAAGGCGGCATGCGCATGCTCGAACTGCCCTTCACCCTGCCG 
CCGTTCGACGTCTCCCTGCACTGGCACGAGAGCAGCGAACGCTCGGCGGCGCTGAACTGGTTCCGCACCACC 
ATCGCCGAGGCGATCATCGCCGCCCAACGCTGA