ViewGene
Locus Name:
GeneID:
Location:

GeneID:2642
TrivialName: PA14_32360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32360
PAO1 Ortholog Locus:PA2497
Sequence Length:879
Protein Length:292
Start: 2811128
Stop: 2812006
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05885.1|AE004677_2 (AE004677) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 292/292 (100%), Positives = 292/292 (100%)
Sequence:
ATGCTCGATCTGGTCCTGCTCCGTACCTTCGTCAGCGTTGTCGACACCGGCAACTTCACCCGCGCCGGCGAA
CACCTGCACCTGACCCAGTCCACCGTCAGCCAGCAGGTCATCCGCCTCGAACAGAACCTCGGTTGCCGCCTG
CTCGACCGCAGCCAGCGGCAGGTCTTGCCGACCGAGGAAGGCGAGCGCCTGCTTGGCTACGCGCGGCGCCTG
CTGCGGCTCTCGGACGAGGCCAGCGAGGCCCTCAGCCCGGCCCATGGCGACGGCGTGCTGCGCCTCGGCGTG
CCGGAAGACCTCGCCGGCGAAGTGCTGATGCCGGTGCTGACGCGCTTCACCGAAGAGCGTCCGCGACTGCGC
CTGGAGGTCGAGAGCGGTCTCAGCCATCACCTGCTGCGCCTCTATCGCAGCGGCGAGCTGGACCTGCTGCTG
GTCAAGCAGTGGGGGGCCGACAGCGACTGCCATGCGCGCTGGGCCGAGCCGCTGGGCTGGTTCGGCAGCGCC
GCGCGGCCGTTCGGCGAGGGTTCGCCGGAGGAGCCGGTGCCGCTGGTGGTGTTCCCGGTCGGCGCGCTGTAT
CGCCAGGAGATGATCCATGCCCTGGAGAGCATCGGGCGTCGCTGGCGCATCGGCTATTCCAGCGCCAGCCTG
GCCAGCCTGGTGGCCGCGGTCGGCGCCGGACTGGGGGTCAGCCTGCTGCCGCTGGGCTGCGTCGGGCCCGAG
CATCGCCTGCTTGGCGCGCAGGCCGGCTTCCCGCCCATCGCTGGCCTGGAGCTGGCGCTCTACGCGCGGCCC
GAGCTGGACAGCGCCGGGCGCACCCTCCGCGACCGCCTGCGCGACCTCTGCGATGCACGCCTGGAAGGGTTG
CAGGGCGAGCGCTGA
Translation:
MLDLVLLRTFVSVVDTGNFTRAGEHLHLTQSTVSQQVIRLEQNLGCRLLDRSQRQVLPTEEGERLLGYARRL
LRLSDEASEALSPAHGDGVLRLGVPEDLAGEVLMPVLTRFTEERPRLRLEVESGLSHHLLRLYRSGELDLLL
VKQWGADSDCHARWAEPLGWFGSAARPFGEGSPEEPVPLVVFPVGALYRQEMIHALESIGRRWRIGYSSASL
ASLVAAVGAGLGVSLLPLGCVGPEHRLLGAQAGFPPIAGLELALYARPELDSAGRTLRDRLRDLCDARLEGL
QGER*
AnnotationID:2650GeneID:2642
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:57
Gene Name:
Confidence Code:3
GeneProduct:putative lysR-family transcriptional regulator
Cell Localization:()
Synonyms:PA2497
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31658.1| (BX640440) putative lysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 293

 Score =  351 bits (900), Expect = 3e-96
 Identities = 188/284 (66%), Positives = 206/284 (72%), Gaps = 2/284 (0%)

>emb|CAE40358.1| (BX640425) putative lysR-family transcriptional regulator
           [Bordetella parapertussis]
          Length = 293

 Score =  351 bits (900), Expect = 3e-96
 Identities = 188/284 (66%), Positives = 206/284 (72%), Gaps = 2/284 (0%)

>gb|AAN69135.1|AE016547_3 (AE016787) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 293

 Score =  230 bits (586), Expect = 8e-60
 Identities = 129/280 (46%), Positives = 172/280 (61%), Gaps = 3/280 (1%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  130 bits (328), Expect = 1e-31
Identities = 104/298 (34%), Positives = 142/298 (47%), Gaps = 15/298 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5287




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22432




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33047




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2642_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2642
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4358
                           PA2497_tr
                           translation of PA2497
                           292
                           99.99
                           99.99
                           0
                           1494.0
     

     
     
127452
                           gb|AAG05885.1|AE004677_2
                           (AE004677) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           292
                           99.99
                           99.99
                           0
                           1494.0
     

     
     
127455
                           emb|CAE43154.1|
                           (BX640419) putative lysR-family transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           297
                           63.63
                           70.37
                           13
                           900.0
     

     
     
127453
                           emb|CAE31658.1|
                           (BX640440) putative lysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           301
                           63.12
                           69.43
                           17
                           902.0
     

     
     
127454
                           emb|CAE40358.1|
                           (BX640425) putative lysR-family transcriptional regulator [Bordetella parapertussis]
                           301
                           63.12
                           69.43
                           17
                           902.0
     

     






      

          
GC ORFID: 45644How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2497Glimmer Score: 

          
Start: 2142796Stop: 2141918

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2497 translation of PA2497Homolog Bit Score 580.0

          
Other Homologs:  t_PA2497 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGATCTGGTCCTGCTCCGTACCTTCGTCAGCGTTGTCGACACCGGCAACTTCACCCGCGCCGGCGAA 
CACCTGCACCTGACCCAGTCCACCGTCAGCCAGCAGGTCATCCGCCTCGAACAGAACCTCGGTTGCCGCCTG 
CTCGACCGCAGCCAGCGGCAGGTCTTGCCGACCGAGGAAGGCGAGCGCCTGCTTGGCTACGCGCGGCGCCTG 
CTGCGGCTCTCGGACGAGGCCAGCGAGGCCCTCAGCCCGGCCCATGGCGACGGCGTGCTGCGCCTCGGCGTG 
CCGGAAGACCTCGCCGGCGAAGTGCTGATGCCGGTGCTGACGCGCTTCACCGAAGAGCGTCCGCGACTGCGC 
CTGGAGGTCGAGAGCGGTCTCAGCCATCACCTGCTGCGCCTCTATCGCAGCGGCGAGCTGGACCTGCTGCTG 
GTCAAGCAGTGGGGGGCCGACAGCGACTGCCATGCGCGCTGGGCCGAGCCGCTGGGCTGGTTCGGCAGCGCC 
GCGCGGCCGTTCGGCGAGGGTTCGCCGGAGGAGCCGGTGCCGCTGGTGGTGTTCCCGGTCGGCGCGCTGTAT 
CGCCAGGAGATGATCCATGCCCTGGAGAGCATCGGGCGTCGCTGGCGCATCGGCTATTCCAGCGCCAGCCTG 
GCCAGCCTGGTGGCCGCGGTCGGCGCCGGACTGGGGGTCAGCCTGCTGCCGCTGGGCTGCGTCGGGCCCGAG 
CATCGCCTGCTTGGCGCGCAGGCCGGCTTCCCGCCCATCGCTGGCCTGGAGCTGGCGCTCTACGCGCGGCCC 
GAGCTGGACAGCGCCGGGCGCACCCTCCGCGACCGCCTGCGCGACCTCTGCGATGCACGCCTGGAAGGGTTG 
CAGGGCGAGCGCTGA