ViewGene
Locus Name:
GeneID:
Location:

GeneID:2641
TrivialName: PA14_40950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40950
PAO1 Ortholog Locus:PA1823
Sequence Length:837
Protein Length:278
Start: 3651973
Stop: 3651137
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05212.1|AE004608_11 (AE004608) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 276/278 (99%), Positives = 276/278 (99%)
Sequence:
ATGGCCGGCGAGTCCCGCTGGCAGGCAGGTCGGCCGACTACCGCCCAGGTCGGCGGCTGGGTGCTCGCGCAC
TGTCAGCAGCGCTTCCTCCAGGACGACAACGGCCTGCTGTTCCCCCGCGAATGGCTGAAGCGCCAGGAACTC
CCGCTGCTCGCCGAGCATGGGGTCGGCCATTGGCAGGGCGAGCCGGTCTACGTGCTGGAACTGGACGAGCCG
ATCGAGCTGCCGGGCATGGCCTGGGCGCCGTTGCGGCAGTTCATGCTGCACGGCGATTTCGATCAGTTCTGC
ATGCTCGGCTATGCCAGCCAGATCGGCATCTGGGCACGTCACAACCGGTTCTGCGGCAACTGCGGCACACGC
ATGCAGGCGCAGGACCACGAGCGGGTGATGCAGTGTCCGCAGTGCGGGCTGCACCAGTACCCGCGCCTGTCG
CCGAGCATGATCGTCCTGGTGACCCGGGGCGACGAGGTGTTGCTGGCGCGTTCGCCGCGCTTCGTGCCGGGG
GTCTACAGTACCCTGGCCGGCTTCGTCGAGGCCGGCGAGTCGGTGGAGCAGTGCGTGGTCCGCGAGGTGCGC
GAAGAGGTCGGGGTGGAGGTCGCCAATCTCGAATACATCGGCAGCCAGAACTGGCCGTTCCCGCATTCGCTG
ATGCTCGGTTTCCACGCCGAGTACGTGTCCGGCGAGATCGTCCCGCAGGAAGACGAGATCGAGGACGCCCAG
TGGTTCTCCCTCGATGCCTTGCCGCCGCTACCGGCGCAGCGCTCGATCGCCCGGCACCTGATCGACCTGTAC
CTGGCGCGCCGCTCAGGCGCCGCTGAACCAGTGCTGCCAGGCTAG
Translation:
MAGESRWQAGRPTTAQVGGWVLAHCQQRFLQDDNGLLFPREWLKRQELPLLAEHGVGHWQGEPVYVLELDEP
IELPGMAWAPLRQFMLHGDFDQFCMLGYASQIGIWARHNRFCGNCGTRMQAQDHERVMQCPQCGLHQYPRLS
PSMIVLVTRGDEVLLARSPRFVPGVYSTLAGFVEAGESVEQCVVREVREEVGVEVANLEYIGSQNWPFPHSL
MLGFHAEYVSGEIVPQEDEIEDAQWFSLDALPPLPAQRSIARHLIDLYLARRSGAAEPVLPG*
AnnotationID:2649GeneID:2641
AnnotatorUID: diggins
Modification Date/Time: 2005-06-02 19:07:56
Gene Name:
Confidence Code:3
GeneProduct:putative NADH pyrophosphatase
Cell Localization:()
Synonyms:nudC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:putative mutT/nudix family protein
Functional Category Confidence Code:5
COGs:COG2816
Secondary Functional Category(ies):
EC Number:3.6.1.22
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69621.1|AE016595_9 (AE016789) NADH pyrophosphatase, putative [Pseudomonas putida
           KT2440]
          Length = 276

 Score =  363 bits (931), Expect = e-100
 Identities = 173/273 (63%), Positives = 203/273 (74%)

>gb|AAO56221.1| (AE016865) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 278

 Score =  346 bits (888), Expect = 7e-95
 Identities = 170/278 (61%), Positives = 196/278 (70%)

>emb|CAE34664.1| (BX640450) NADH pyrophosphatase [Bordetella bronchiseptica]
          Length = 244

 Score =  193 bits (491), Expect = 8e-49
 Identities = 97/187 (51%), Positives = 126/187 (67%), Gaps = 2/187 (1%)






 
Structural Features:
COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, 
probably nucleic-acid-binding 
[DNA replication, recombination, and repair]
CD-Length = 279 residues,  99.3% aligned
Score =  313 bits (802), Expect = 2e-86
Identities = 124/280 (44%), Positives = 157/280 (56%), Gaps = 5/280 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22430




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37111




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2641_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2641
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4357
                           PA1823_tr
                           translation of PA1823
                           278
                           99.28
                           99.28
                           0
                           1495.0
     

     
     
127422
                           gb|AAG05212.1|AE004608_11
                           (AE004608) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           278
                           99.28
                           99.28
                           0
                           1495.0
     

     
     
127423
                           gb|AAC34568.1|
                           (AF083252) unknown [Pseudomonas aeruginosa]
                           278
                           98.56
                           98.92
                           0
                           1490.0
     

     
     
127424
                           gb|AAN69621.1|AE016595_9
                           (AE016789) NADH pyrophosphatase, putative [Pseudomonas putida KT2440]
                           278
                           62.23
                           73.02
                           2
                           928.0
     

     
     
127425
                           gb|AAO56221.1|
                           (AE016865) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           283
                           61.13
                           70.67
                           10
                           890.0
     

     






      

          
GC ORFID: 45643How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1823Glimmer Score: 

          
Start: 1301937Stop: 1302773

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1823 translation of PA1823Homolog Bit Score 580.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1380 (ORF: BLASTX 347.0), t_PA1823 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGCGAGTCCCGCTGGCAGGCAGGTCGGCCGACTACCGCCCAGGTCGGCGGCTGGGTGCTCGCGCAC 
TGTCAGCAGCGCTTCCTCCAGGACGACAACGGCCTGCTGTTCCCCCGCGAATGGCTGAAGCGCCAGGAACTC 
CCGCTGCTCGCCGAGCATGGGGTCGGCCATTGGCAGGGCGAGCCGGTCTACGTGCTGGAACTGGACGAGCCG 
ATCGAGCTGCCGGGCATGGCCTGGGCGCCGTTGCGGCAGTTCATGCTGCACGGCGATTTCGATCAGTTCTGC 
ATGCTCGGCTATGCCAGCCAGATCGGCATCTGGGCACGTCACAACCGGTTCTGCGGCAACTGCGGCACACGC 
ATGCAGGCGCAGGACCACGAGCGGGTGATGCAGTGTCCGCAGTGCGGGCTGCACCAGTACCCGCGCCTGTCG 
CCGAGCATGATCGTCCTGGTGACCCGGGGCGACGAGGTGTTGCTGGCGCGTTCGCCGCGCTTCGTGCCGGGG 
GTCTACAGTACCCTGGCCGGCTTCGTCGAGGCCGGCGAGTCGGTGGAGCAGTGCGTGGTCCGCGAGGTGCGC 
GAAGAGGTCGGGGTGGAGGTCGCCAATCTCGAATACATCGGCAGCCAGAACTGGCCGTTCCCGCATTCGCTG 
ATGCTCGGTTTCCACGCCGAGTACGTGTCCGGCGAGATCGTCCCGCAGGAAGACGAGATCGAGGACGCCCAG 
TGGTTCTCCCTCGATGCCTTGCCGCCGCTACCGGCGCAGCGCTCGATCGCCCGGCACCTGATCGACCTGTAC 
CTGGCGCGCCGCTCAGGCGCCGCTGAACCAGTGCTGCCAGGCTAG