ViewGene

Locus Name:
GeneID:
Location:

GeneID:2640
TrivialName: PA14_42690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42690
PAO1 Ortholog Locus:PA1687
Sequence Length:861
Protein Length:286
Start: 3798445
Stop: 3797585
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05076.1|AE004596_2 (AE004596) spermidine synthase [Pseudomonas aeruginosa PAO1]
Identities = 285/286 (99%), Positives = 285/286 (99%)
Sequence:
ATGAGCGATTATCAGGAAACTTTGTACCAGGGCTACGGCCAGCGCTTCAGCATCGACAACATGCTGCATGAG
GTGCGCACCGAGCACCAGCACCTGGTGATTTTCGAAAACGCCCGGATGGGCCGGGTGATGGCGCTCGACGGA
GTGATCCAGACCACCGAGGCCGACGAGTTCATCTACCACGAGATGCTCACCCACGTGCCGATCCTCGCCCAC
GGCGCGGCCCGGCGCGTGTTGATCATCGGCGGTGGCGACGGCGGCATGCTGCGCGAGGTGGCCAAGCACAAG
AGCGTCGAGCGGATCACCATGGTCGAGATCGACGGCACCGTGGTTGACATGTGTAAGGAGTTCCTGCCCAAC
CACTCCCAGGGCGCCTTCGACGACCCGCGGCTGAACCTGGTGATCGACGACGGCATGCGCTTCGTGGCTACC
ACGGAAGAACGCTTCGACGTGATCATCTCCGACTCCACCGACCCGATCGGCCCTGGCGAGGTGCTGTTCTCC
GAGAACTTCTACCAGGCCTGCCGGCGCTGCCTGAACGAGGGCGGCATCCTGGTCACCCAGAACGGCACGCCG
TTCATGCAACTGGAGGAAGTGCGCACCACCGCCGCGCGTACCGACGGGCTGTTCGCCGACTGGCATTTCTAC
CAGGCGGCGGTGCCGACCTATATCGGCGGCGCCATGACCTTCGCCTGGGGTTCGACTCGCGAAGGCCTGCGT
CGCCTTCCGCTGGAAACGCTGCGCCAGCGCTTCCGCGACAGCGGCATCGCCACCCGCTACTACAACGCCGAT
ATCCACCTGGGCGCGTTTGCTCTGCCGCAGTACGTGCTGCAGGCCATCGGCAAGCAGGACAACGACTGA
Translation:
MSDYQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAH
GAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFVAT
TEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFY
QAAVPTYIGGAMTFAWGSTREGLRRLPLETLRQRFRDSGIATRYYNADIHLGAFALPQYVLQAIGKQDND*
AnnotationID:2648GeneID:2640
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 09:09:48
Gene Name:speE
Confidence Code:2
GeneProduct:spermidine synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0421,pfam01564
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:2.5.1.16
Status:ACTIVE
Pathway:
Spermidine biosynthesis from arginine; third (last) step.
Homology:
>gb|AAO55573.1| (AE016863) spermidine synthase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 286

 Score =  509 bits (1310), Expect = e-144
 Identities = 244/286 (85%), Positives = 262/286 (91%)

>gb|AAM84362.1|AE013680_4 (AE013680) spermidine synthase;  putrescine aminopropyltransferase
           [Yersinia pestis KIM]
          Length = 324

 Score =  367 bits (942), Expect = e-101
 Identities = 173/277 (62%), Positives = 215/277 (77%)

>gb|AAP15662.1| (AE016978) spermidine synthase, putrescine aminopropyltransferase
           [Shigella flexneri 2a str. 2457T]
          Length = 288

 Score =  358 bits (919), Expect = 2e-98
 Identities = 169/280 (60%), Positives = 208/280 (74%)
Structural Features:
COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]
CD-Length = 282 residues,  95.7% aligned
Score =  321 bits (824), Expect = 6e-89
Identities = 133/272 (48%), Positives = 177/272 (65%), Gaps = 2/272 (0%)

pfam01564, Spermine_synth, Spermine/spermidine synthase
CD-Length = 239 residues,  95.4% aligned
Score =  277 bits (711), Expect = 8e-76
Identities = 108/229 (47%), Positives = 149/229 (65%), Gaps = 1/229 (0%)
Genomic Context:
Comment:
ReferenceID:5283
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22428
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37184
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2640_cdd.html
URL:
ReferenceID:37869
Author/Investigator(s): Tabor CW, Tabor H.
Title: The speEspeD operon of Escherichia coli. Formation and processing of a proenzyme form of S-adenosylmethionine decarboxylase.
PubMed: 3316212
MedLine:
Source:
J Biol Chem. 1987 Nov 25;262(33):16037-40.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3316212
ReferenceID:37870
Author/Investigator(s): Tabor CW, Tabor H, Xie QW.
Title: Spermidine synthase of Escherichia coli: localization of the speE gene.
PubMed: 3526348
MedLine:
Source:
Proc Natl Acad Sci U S A. 1986 Aug;83(16):6040-4.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3526348
Homologs By Global Alignment
Gene ID:2640

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4356 PA1687_tr translation of PA1687 286 99.65 99.65 0 1496.0
127394 gb|AAG05076.1|AE004596_2 (AE004596) spermidine synthase [Pseudomonas aeruginosa PAO1] 286 99.65 99.65 0 1496.0
127396 gb|AAO55573.1| (AE016863) spermidine synthase [Pseudomonas syringae pv. tomato str. DC3000] 286 85.31 91.60 0 1310.0
127395 gb|AAD32692.1|AF143948_1 (AF143948) putative spermidine synthase [Pseudomonas aeruginosa] 336 84.82 84.82 50 1496.0
127399 emb|CAC92641.1| (AJ414157) spermidine synthase [Yersinia pestis CO92] 296 59.79 74.32 10 936.0
GC ORFID: 45642How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1687Glimmer Score:
Start: 1155464Stop: 1156324
Length: 861
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1687 translation of PA1687Homolog Bit Score 580.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene866 (ORF: BLASTX 511.0), t_PA1687 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGATTATCAGGAAACTTTGTACCAGGGCTACGGCCAGCGCTTCAGCATCGACAACATGCTGCATGAG
GTGCGCACCGAGCACCAGCACCTGGTGATTTTCGAAAACGCCCGGATGGGCCGGGTGATGGCGCTCGACGGA
GTGATCCAGACCACCGAGGCCGACGAGTTCATCTACCACGAGATGCTCACCCACGTGCCGATCCTCGCCCAC
GGCGCGGCCCGGCGCGTGTTGATCATCGGCGGTGGCGACGGCGGCATGCTGCGCGAGGTGGCCAAGCACAAG
AGCGTCGAGCGGATCACCATGGTCGAGATCGACGGCACCGTGGTTGACATGTGTAAGGAGTTCCTGCCCAAC
CACTCCCAGGGCGCCTTCGACGACCCGCGGCTGAACCTGGTGATCGACGACGGCATGCGCTTCGTGGCTACC
ACGGAAGAACGCTTCGACGTGATCATCTCCGACTCCACCGACCCGATCGGCCCTGGCGAGGTGCTGTTCTCC
GAGAACTTCTACCAGGCCTGCCGGCGCTGCCTGAACGAGGGCGGCATCCTGGTCACCCAGAACGGCACGCCG
TTCATGCAACTGGAGGAAGTGCGCACCACCGCCGCGCGTACCGACGGGCTGTTCGCCGACTGGCATTTCTAC
CAGGCGGCGGTGCCGACCTATATCGGCGGCGCCATGACCTTCGCCTGGGGTTCGACTCGCGAAGGCCTGCGT
CGCCTTCCGCTGGAAACGCTGCGCCAGCGCTTCCGCGACAGCGGCATCGCCACCCGCTACTACAACGCCGAT
ATCCACCTGGGCGCGTTTGCTCTGCCGCAGTACGTGCTGCAGGCCATCGGCAAGCAGGACAACGACTGA