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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05076.1|AE004596_2 (AE004596) spermidine synthase [Pseudomonas aeruginosa PAO1]
Identities = 285/286 (99%), Positives = 285/286 (99%)
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Sequence:
ATGAGCGATTATCAGGAAACTTTGTACCAGGGCTACGGCCAGCGCTTCAGCATCGACAACATGCTGCATGAG
GTGCGCACCGAGCACCAGCACCTGGTGATTTTCGAAAACGCCCGGATGGGCCGGGTGATGGCGCTCGACGGA
GTGATCCAGACCACCGAGGCCGACGAGTTCATCTACCACGAGATGCTCACCCACGTGCCGATCCTCGCCCAC
GGCGCGGCCCGGCGCGTGTTGATCATCGGCGGTGGCGACGGCGGCATGCTGCGCGAGGTGGCCAAGCACAAG
AGCGTCGAGCGGATCACCATGGTCGAGATCGACGGCACCGTGGTTGACATGTGTAAGGAGTTCCTGCCCAAC
CACTCCCAGGGCGCCTTCGACGACCCGCGGCTGAACCTGGTGATCGACGACGGCATGCGCTTCGTGGCTACC
ACGGAAGAACGCTTCGACGTGATCATCTCCGACTCCACCGACCCGATCGGCCCTGGCGAGGTGCTGTTCTCC
GAGAACTTCTACCAGGCCTGCCGGCGCTGCCTGAACGAGGGCGGCATCCTGGTCACCCAGAACGGCACGCCG
TTCATGCAACTGGAGGAAGTGCGCACCACCGCCGCGCGTACCGACGGGCTGTTCGCCGACTGGCATTTCTAC
CAGGCGGCGGTGCCGACCTATATCGGCGGCGCCATGACCTTCGCCTGGGGTTCGACTCGCGAAGGCCTGCGT
CGCCTTCCGCTGGAAACGCTGCGCCAGCGCTTCCGCGACAGCGGCATCGCCACCCGCTACTACAACGCCGAT
ATCCACCTGGGCGCGTTTGCTCTGCCGCAGTACGTGCTGCAGGCCATCGGCAAGCAGGACAACGACTGA |
Translation:
MSDYQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAH
GAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFVAT
TEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFY
QAAVPTYIGGAMTFAWGSTREGLRRLPLETLRQRFRDSGIATRYYNADIHLGAFALPQYVLQAIGKQDND* |
AnnotationID:2648 | GeneID:2640 |
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Modification Date/Time: |
2005-06-01 09:09:48 |
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GeneProduct: | spermidine synthase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (8) Central intermediary metabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | amino acid biosynthesis and metabolism |
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Pathway: | Spermidine biosynthesis from arginine; third (last) step. |
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Homology: | >gb|AAO55573.1| (AE016863) spermidine synthase [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 286
Score = 509 bits (1310), Expect = e-144
Identities = 244/286 (85%), Positives = 262/286 (91%)
>gb|AAM84362.1|AE013680_4 (AE013680) spermidine synthase; putrescine aminopropyltransferase
[Yersinia pestis KIM]
Length = 324
Score = 367 bits (942), Expect = e-101
Identities = 173/277 (62%), Positives = 215/277 (77%)
>gb|AAP15662.1| (AE016978) spermidine synthase, putrescine aminopropyltransferase
[Shigella flexneri 2a str. 2457T]
Length = 288
Score = 358 bits (919), Expect = 2e-98
Identities = 169/280 (60%), Positives = 208/280 (74%) |
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Structural Features: | COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]
CD-Length = 282 residues, 95.7% aligned
Score = 321 bits (824), Expect = 6e-89
Identities = 133/272 (48%), Positives = 177/272 (65%), Gaps = 2/272 (0%)
pfam01564, Spermine_synth, Spermine/spermidine synthase
CD-Length = 239 residues, 95.4% aligned
Score = 277 bits (711), Expect = 8e-76
Identities = 108/229 (47%), Positives = 149/229 (65%), Gaps = 1/229 (0%) |
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