ViewGene

Locus Name:
GeneID:
Location:

GeneID: 264

TrivialName: PA14_13530

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_13530

PAO1 Ortholog Locus: PA3893

Sequence Length: 2196

Protein Length: 731

Start: 1164159

Stop: 1166354

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07280.1|AE004806_7 (AE004806) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 731/731 (100%), Positives = 731/731 (100%)

Sequence:

ATGAGTGGCCGCTCCGCTGGTTTCGCCCTGCCCAGCCGCGACGAGTGGCGGCGCGCGCTGGCCGAGTGGGCG
CGCAGCGACGGGGCGACCTGGATCTACGTGTTCAAGGTGCTCTGCGCGGCCTTCCTGACCCTCTGGCTGGCG
ATGCGCCTGGAGTTGCCGCAACCGAGCACGGCGACCATCACCGTGTTCATCGTCATGCAGCCGCAGAGCGGC
CAGGTGTTCGCCAAGAGCTTCTACCGCATCCTCGGCACCCTGGTCGGCCTCAGCGTGATGGTCACCCTGATC
GCCCTGTTCGCCCAGGAGCGGGTGCTGTTCCTGCTCAGCTCGGCGATCTGGATCGGTCTCTGCACCGCCGGG
GCCGCCCGCTACCGTGACTTCCGCTCCTACGCCTGCGTGCTCGCCGGCTACACCGCGACGCTGATCGGCATC
CCCGCCACCAGCCATCCGGAAGGCGCCTTCATGCAGGCGATCTGGCGGGTCCTGGAAATCAGCCTGGCGATT
CTCTGCTCGGGGGTGGTCAGCGCGGTGATCATGCCGCAGACCACCAGCGCGGCGATGCGCAATGCGCTGTAC
GTGCGCTTCGGCCTGTTCGCTGCGTTCGTCCTCGACAGCCTGCGCGGGGTCGGCGGGCGCGAGCGCTTCGAA
AGCAGCAACGTGGCCTTCGCCGCCCAGGCCGTGGGCCTGGAGACGATGCGCGCGGCGAGCGCCTTCGAGGAT
CCGCACATGCGCCTGCGCAATGGCCGGCTGATTCGCCTGAGCAGCGAGTTCATGGCCATGAATACCCGTTTC
CACGCCCTCCACCAACTGCTCGAACGCCTGCGCGCGCAGGGCTCCACCCAGGTGCTGGAAGCGTTCGAACCG
TGCCTGGAGGAAATCACCGGGCTGCTCGAGGAGATCCGTGGCCGCGCCGTCACCGACCATGACGCCGAGCGC
TTCGCCCAGCGCCTCGCCGACTGCCGCGAACGCCTGATGGCGCGCATCCGCCAGGCGCGCGGAGAACTGCTG
GCGCGGGAGCCGGGCGAAGAGGCGCGGCTGGACTTCAATACCGCCGCCGAGCTGCTCTACCGTTTCGCCGAG
GAGATGCACGACTACGCCCTGACCCATGCCTCGCTGGCCGCCCACCGCCACGAGCGCGAGCAGTGGAAGGAC
GCCTTCACCGCCAAGGCCAACGCGGTGGCGGCGGCAGTGGCGGGGATGCGCACCGGGTTGATGATCCTGCTG
TTCGGCTGTTTCTGGATCTACAGCACCTGGCCCAGCGGCGGCACCTTCGCCCTCAACGCGGTGGCGGTCTCG
GCGTTGGCCTCGGCGGCGCCGAACCCGAAGAAGGTCGCCATGCAGATGGCCATCGGCACCATGGCGGCGGCG
CTGCTCGGCTTCAGCGAGATGTTCTTCGTCTACCCGCACATCGACGGTTTCCCGCTGCTGTGCCTGGTGCTG
GCGCCGGTGTTCGCCCTCGGCGCGTTCATCTCCTCGCGGCCGCAGTGGGCCGGCTACGGTCTCGGCCTGCTG
GTGTTCTTCTGCTTCGGTTCGGTGCCGGCGAACCTGACCGTCTACGACCCGGCCCACGTGATCAACGAGTAC
ATCGCCCTGATCCTCTCGATGCTGCTCTCGGCCGCGGCCGCCGCGGTCATTCTGCCGCCCAACAGCGCCTGG
CTGTGGAAGCGCCTCGAGCGCGACCTGCGGATGCGCGTGGTGTTCGCCATCAGCGGCAGGAGCAGGGGGCTT
GGCTCGGCCTTCGAAAGCGGCACCCGCGACCTGCTGAACCAGGCCTATGGCGTCGCTGCCGGGCGCCCGGAC
GTGCAGCGCGGCCTGCTGCGCTGGATGTTCCTGGTGCTCGAGGTCGGCCACGCGATCATCGAGCTGCGTCGC
GAGCAGGAGCGCCTGCCGGACGAACCCTGCTACGCCGAGGCCATGCCCTGGCGCCAGGCGATCCGCGCCATG
GGGCGGGCCCTGATCCGACTGTTCGTGCGCCCTGGCGCGGAGAACCTGGAGCGCGCCCTGGCGGCCGTCGAC
CAGGCCATCCACGCGGCCAGGCACACCGACGAACCCTGCGCGCCGCACTTCGACAGCTCGCCGCTACGGCGG
GTGCGCAGCTACCTGCACTTCATCCGTTCTTCCTTGCTCGCGCCGACCTCGCCGCTGACCGAACTGGCCGGT
CGGACGAGCGGCCAAGGTACCGTCCATGCCTCGTGA

Translation:

MSGRSAGFALPSRDEWRRALAEWARSDGATWIYVFKVLCAAFLTLWLAMRLELPQPSTATITVFIVMQPQSG
QVFAKSFYRILGTLVGLSVMVTLIALFAQERVLFLLSSAIWIGLCTAGAARYRDFRSYACVLAGYTATLIGI
PATSHPEGAFMQAIWRVLEISLAILCSGVVSAVIMPQTTSAAMRNALYVRFGLFAAFVLDSLRGVGGRERFE
SSNVAFAAQAVGLETMRAASAFEDPHMRLRNGRLIRLSSEFMAMNTRFHALHQLLERLRAQGSTQVLEAFEP
CLEEITGLLEEIRGRAVTDHDAERFAQRLADCRERLMARIRQARGELLAREPGEEARLDFNTAAELLYRFAE
EMHDYALTHASLAAHRHEREQWKDAFTAKANAVAAAVAGMRTGLMILLFGCFWIYSTWPSGGTFALNAVAVS
ALASAAPNPKKVAMQMAIGTMAAALLGFSEMFFVYPHIDGFPLLCLVLAPVFALGAFISSRPQWAGYGLGLL
VFFCFGSVPANLTVYDPAHVINEYIALILSMLLSAAAAAVILPPNSAWLWKRLERDLRMRVVFAISGRSRGL
GSAFESGTRDLLNQAYGVAAGRPDVQRGLLRWMFLVLEVGHAIIELRREQERLPDEPCYAEAMPWRQAIRAM
GRALIRLFVRPGAENLERALAAVDQAIHAARHTDEPCAPHFDSSPLRRVRSYLHFIRSSLLAPTSPLTELAG
RTSGQGTVHAS*

AnnotationID:274 GeneID:264

AnnotatorUID: diggins

Modification Date/Time: 2005-04-25 20:08:38

Gene Name:

Confidence Code: 3

GeneProduct: putative outer membrane protein

Cell Localization: ()

Synonyms: PA3893

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1289,pfam04632

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN66888.1|AE016317_5 (AE016778) fusaric acid resistance protein, putative [Pseudomonas
           putida KT2440]
          Length = 725

 Score =  896 bits (2315), Expect = 0.0
 Identities = 444/706 (62%), Positives = 539/706 (76%)

>gb|AAC60390.1| (S77489) FusC [Burkholderia cepacia]
          Length = 346

 Score =  290 bits (741), Expect = 3e-77
 Identities = 158/346 (45%), Positives = 211/346 (60%), Gaps = 3/346 (0%)

Structural Features:

COG1289, Predicted membrane protein 
CD-Length = 674 residues, 100.0% aligned
Score =  365 bits (938), Expect = 2e-101
Identities = 223/703 (31%), Positives = 311/703 (44%), Gaps = 32/703 (4%)

pfam04632, FUSC, Fusaric acid resistance protein conserved region.
CD-Length = 119 residues, 100.0% aligned
Score =  135 bits (341), Expect = 4e-32
Identities = 64/119 (53%), Positives = 76/119 (63%)

Genomic Context:

Comment:

ReferenceID:531

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17673

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31673

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 264_cdd.html

URL:

Homologs By Global Alignment

Gene ID:264

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

441 PA3893_tr translation of PA3893 731 99.99 99.99 0 3726.0

23713 gb|AAG07280.1|AE004806_7 (AE004806) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 731 99.99 99.99 0 3726.0

442 PA0875_tr translation of PA0875 742 62.93 74.39 22 2407.0

23714 gb|AAG04264.1|AE004522_6 (AE004522) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 742 62.93 74.39 22 2407.0

23715 gb|AAN66888.1|AE016317_5 (AE016778) fusaric acid resistance protein, putative [Pseudomonas putida KT2440] 735 61.49 74.55 14 2309.0

GC ORFID: `43266`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3893`	Glimmer Score:
Start: `3789779`	Stop: `3787584`
Length: `2196`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3893 translation of PA3893`	Homolog Bit Score `1439.0`
Other Homologs: `t_PA0875 (ORF: BLASTX 937.0), psyr_15may02_Scaffold3_revised_gene4366 (ORF: BLASTX 876.0), t_PA3893 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTGGCCGCTCCGCTGGTTTCGCCCTGCCCAGCCGCGACGAGTGGCGGCGCGCGCTGGCCGAGTGGGCG CGCAGCGACGGGGCGACCTGGATCTACGTGTTCAAGGTGCTCTGCGCGGCCTTCCTGACCCTCTGGCTGGCG ATGCGCCTGGAGTTGCCGCAACCGAGCACGGCGACCATCACCGTGTTCATCGTCATGCAGCCGCAGAGCGGC CAGGTGTTCGCCAAGAGCTTCTACCGCATCCTCGGCACCCTGGTCGGCCTCAGCGTGATGGTCACCCTGATC GCCCTGTTCGCCCAGGAGCGGGTGCTGTTCCTGCTCAGCTCGGCGATCTGGATCGGTCTCTGCACCGCCGGG GCCGCCCGCTACCGTGACTTCCGCTCCTACGCCTGCGTGCTCGCCGGCTACACCGCGACGCTGATCGGCATC CCCGCCACCAGCCATCCGGAAGGCGCCTTCATGCAGGCGATCTGGCGGGTCCTGGAAATCAGCCTGGCGATT CTCTGCTCGGGGGTGGTCAGCGCGGTGATCATGCCGCAGACCACCAGCGCGGCGATGCGCAATGCGCTGTAC GTGCGCTTCGGCCTGTTCGCTGCGTTCGTCCTCGACAGCCTGCGCGGGGTCGGCGGGCGCGAGCGCTTCGAA AGCAGCAACGTGGCCTTCGCCGCCCAGGCCGTGGGCCTGGAGACGATGCGCGCGGCGAGCGCCTTCGAGGAT CCGCACATGCGCCTGCGCAATGGCCGGCTGATTCGCCTGAGCAGCGAGTTCATGGCCATGAATACCCGTTTC CACGCCCTCCACCAACTGCTCGAACGCCTGCGCGCGCAGGGCTCCACCCAGGTGCTGGAAGCGTTCGAACCG TGCCTGGAGGAAATCACCGGGCTGCTCGAGGAGATCCGTGGCCGCGCCGTCACCGACCATGACGCCGAGCGC TTCGCCCAGCGCCTCGCCGACTGCCGCGAACGCCTGATGGCGCGCATCCGCCAGGCGCGCGGAGAACTGCTG GCGCGGGAGCCGGGCGAAGAGGCGCGGCTGGACTTCAATACCGCCGCCGAGCTGCTCTACCGTTTCGCCGAG GAGATGCACGACTACGCCCTGACCCATGCCTCGCTGGCCGCCCACCGCCACGAGCGCGAGCAGTGGAAGGAC GCCTTCACCGCCAAGGCCAACGCGGTGGCGGCGGCAGTGGCGGGGATGCGCACCGGGTTGATGATCCTGCTG TTCGGCTGTTTCTGGATCTACAGCACCTGGCCCAGCGGCGGCACCTTCGCCCTCAACGCGGTGGCGGTCTCG GCGTTGGCCTCGGCGGCGCCGAACCCGAAGAAGGTCGCCATGCAGATGGCCATCGGCACCATGGCGGCGGCG CTGCTCGGCTTCAGCGAGATGTTCTTCGTCTACCCGCACATCGACGGTTTCCCGCTGCTGTGCCTGGTGCTG GCGCCGGTGTTCGCCCTCGGCGCGTTCATCTCCTCGCGGCCGCAGTGGGCCGGCTACGGTCTCGGCCTGCTG GTGTTCTTCTGCTTCGGTTCGGTGCCGGCGAACCTGACCGTCTACGACCCGGCCCACGTGATCAACGAGTAC ATCGCCCTGATCCTCTCGATGCTGCTCTCGGCCGCGGCCGCCGCGGTCATTCTGCCGCCCAACAGCGCCTGG CTGTGGAAGCGCCTCGAGCGCGACCTGCGGATGCGCGTGGTGTTCGCCATCAGCGGCAGGAGCAGGGGGCTT GGCTCGGCCTTCGAAAGCGGCACCCGCGACCTGCTGAACCAGGCCTATGGCGTCGCTGCCGGGCGCCCGGAC GTGCAGCGCGGCCTGCTGCGCTGGATGTTCCTGGTGCTCGAGGTCGGCCACGCGATCATCGAGCTGCGTCGC GAGCAGGAGCGCCTGCCGGACGAACCCTGCTACGCCGAGGCCATGCCCTGGCGCCAGGCGATCCGCGCCATG GGGCGGGCCCTGATCCGACTGTTCGTGCGCCCTGGCGCGGAGAACCTGGAGCGCGCCCTGGCGGCCGTCGAC CAGGCCATCCACGCGGCCAGGCACACCGACGAACCCTGCGCGCCGCACTTCGACAGCTCGCCGCTACGGCGG GTGCGCAGCTACCTGCACTTCATCCGTTCTTCCTTGCTCGCGCCGACCTCGCCGCTGACCGAACTGGCCGGT CGGACGAGCGGCCAAGGTACCGTCCATGCCTCGTGA