ViewGene

Locus Name:
GeneID:
Location:

GeneID:2639
TrivialName: PA14_53530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53530
PAO1 Ortholog Locus:PA0830
Sequence Length:834
Protein Length:277
Start: 4746002
Stop: 4746835
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04219.1|AE004517_14 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 276/277 (99%), Positives = 276/277 (99%)
Sequence:
ATGGCCAGCACCACCCCCGAAGGTCTGGAGATCCGCCCGCGTCATCTGGACTTCGACCTGCCCGATCCGATG
CCGCGCCACTGGCACAGCGGCGACGCTTTCAAGACCCACATGTTCAACGCCATGTCGGTGCTGTTCCCCGAT
GGCGAGCGCTTCTTCATCGACTCCGTGCGCCACTACCGCGAGCGGGTCGAGGACCCGGCGCTGAAGCAGCAG
ATCCGTGGCTTCATCGGCCAGGAAGGCCACCACAGCCGCGAGCACCTGGTCTACAGCGACCGCCTGCGCGCC
CTCGGCTACGACATCGACCGCCTGGAAGGCGGCGCCAAGCGGCGCATCCGCTTCGCCCAGCAGAAACTGCAC
CCGTCGCGGCAACTGGCGGCCACCGCGGCCCTGGAGCACCTCACCGCGATCATGGCCGACGGCCTGCTGAGC
AACCCCAGGTGGCTGGAAGGCGCCGACCCGACCATGGCCCGCCTGTGGCGTTGGCACGCACTGGAGGAAACC
GAGCACAAGGCGGTGGCCTACGACGTGTTCATGCTGGTCAACGGCAAGGCCAGGCTGCGCCGCCGGGCGATG
GTCCAGGGCACCTTCTTCTTCGCCCTAGACACCACCAAGGGCCTGGTCCACATGCTCAAGCGCGACGGCCTG
CTGTGGAACTTCAAGGTCTGGCGCGACGGCATCAAGTGGCTGTGGGGCAAGGACGGCGTGTTCCGCTCGCTG
GTGGGCGTGTACCTGGACTTCTACAAGAAGGACTTCCACCCCTGGCAGCACAATAACCTGCACCTCATCGAG
CAGTACCGCGACCAGTTCGAACTGGAACCGAAGGCCGCCTGA
Translation:
MASTTPEGLEIRPRHLDFDLPDPMPRHWHSGDAFKTHMFNAMSVLFPDGERFFIDSVRHYRERVEDPALKQQ
IRGFIGQEGHHSREHLVYSDRLRALGYDIDRLEGGAKRRIRFAQQKLHPSRQLAATAALEHLTAIMADGLLS
NPRWLEGADPTMARLWRWHALEETEHKAVAYDVFMLVNGKARLRRRAMVQGTFFFALDTTKGLVHMLKRDGL
LWNFKVWRDGIKWLWGKDGVFRSLVGVYLDFYKKDFHPWQHNNLHLIEQYRDQFELEPKAA*
AnnotationID:2647GeneID:2639
AnnotatorUID: danlee
Modification Date/Time: 2004-04-29 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0830
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3687, Predicted metal-dependent hydrolase [General function prediction only].
        CD-Length = 280 residues,  98.9% aligned
        Score =  349 bits (897), Expect = 4e-97
Genomic Context:
Comment:
ReferenceID:5281
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22426
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2639

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4355 PA0830_tr translation of PA0830 277 99.63 99.63 0 1495.0
127392 gb|AAG04219.1|AE004517_14 (AE004517) hypothetical protein PA0830 [Pseudomonas aeruginosa PAO1] 277 99.63 99.63 0 1495.0
127393 gb|AAO56321.1| (AE016866) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 282 37.58 53.90 20 467.0
GC ORFID: 45641How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0830Glimmer Score:
Start: 207905Stop: 207072
Length: 834
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0830 translation of PA0830Homolog Bit Score 580.0
Other Homologs: t_PA0830 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAGCACCACCCCCGAAGGTCTGGAGATCCGCCCGCGTCATCTGGACTTCGACCTGCCCGATCCGATG
CCGCGCCACTGGCACAGCGGCGACGCTTTCAAGACCCACATGTTCAACGCCATGTCGGTGCTGTTCCCCGAT
GGCGAGCGCTTCTTCATCGACTCCGTGCGCCACTACCGCGAGCGGGTCGAGGACCCGGCGCTGAAGCAGCAG
ATCCGTGGCTTCATCGGCCAGGAAGGCCACCACAGCCGCGAGCACCTGGTCTACAGCGACCGCCTGCGCGCC
CTCGGCTACGACATCGACCGCCTGGAAGGCGGCGCCAAGCGGCGCATCCGCTTCGCCCAGCAGAAACTGCAC
CCGTCGCGGCAACTGGCGGCCACCGCGGCCCTGGAGCACCTCACCGCGATCATGGCCGACGGCCTGCTGAGC
AACCCCAGGTGGCTGGAAGGCGCCGACCCGACCATGGCCCGCCTGTGGCGTTGGCACGCACTGGAGGAAACC
GAGCACAAGGCGGTGGCCTACGACGTGTTCATGCTGGTCAACGGCAAGGCCAGGCTGCGCCGCCGGGCGATG
GTCCAGGGCACCTTCTTCTTCGCCCTAGACACCACCAAGGGCCTGGTCCACATGCTCAAGCGCGACGGCCTG
CTGTGGAACTTCAAGGTCTGGCGCGACGGCATCAAGTGGCTGTGGGGCAAGGACGGCGTGTTCCGCTCGCTG
GTGGGCGTGTACCTGGACTTCTACAAGAAGGACTTCCACCCCTGGCAGCACAATAACCTGCACCTCATCGAG
CAGTACCGCGACCAGTTCGAACTGGAACCGAAGGCCGCCTGA