ViewGene
Locus Name:
GeneID:
Location:

GeneID:2636
TrivialName: PA14_66110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66110
PAO1 Ortholog Locus:PA5000
Sequence Length:885
Protein Length:294
Start: 5889815
Stop: 5888931
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08385.1|AE004912_11 (AE004912) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 290/294 (98%), Positives = 291/294 (98%)
Sequence:
ATGACGCTCGTCGATGATGGTTCGCAGCCATTGGTTTCCGTGATCATCGCTTCCTATAACCATGAAAAGTAC
ATAGAAGCGAGCATCGCCAGCGTGGCTGCGCAGACGTACCGCAACGTGGAACTGCTGGTGGTGGACGATGGT
TCCAGCGATGGCAGCGTCGAGCTTTTGCACGGGCTCCAGGCGAAGTACGGCTTCGACCTCAGGGTCCAGCAG
AACCAGGGACTGTCGAAAACGCTCAACGAGGCGATCGCCAGGGCCCGGGGAAATCTCATCGTGCCCTTCGGG
TCGGACGACATCATGTTGCCGCAACGCCTGGAGAAACAGGTGGCACACATGTGGGACAAGCCCGAGGTAGGT
ATCTGCGCGGGCAATATCGAGATCATCGACTCCAATGGCCGGGTCATGCCGGGTAAGGAGCAGCGCAAACGC
GACCTGCCTTTCCGCCGCCTCGACTTCGATGACCTGTTCCTGGACCGCAAGCCGGGCCCGATGGCGCCCACC
TTGATGTTCCGGCGGGAAGCCCTGGAGAAGGTCGGCGGTTTCGATCCGGACATACGCCTGGAAGATGTCTAT
ATCGAACTGGCGGTGACCAAGGCTGGCTACGTCATCGACATTCTTGGCGAGGTCCTCGCCCAGTACCGCAAG
CATCCCACCAATACGTACAAGAACGCCCGTTTCATGGTGGACAACGTATTCAAGACGTACAGCCAGTTCAGC
GATCACCCCGATTACGAGCAGGTGATCATGCGCTTCCGCAATTCGATGTTTCTCAAGTGCTCGAACCGGGAC
AAGGTGCTGGCCCGGGAGCTGCTCTCCGGCTTGCCGCTGAAGTACTGGAACGAGAAGACCTTCCGCGGCATT
GCGCGGTTGTTTTTCTCCTAG
Translation:
MTLVDDGSQPLVSVIIASYNHEKYIEASIASVAAQTYRNVELLVVDDGSSDGSVELLHGLQAKYGFDLRVQQ
NQGLSKTLNEAIARARGNLIVPFGSDDIMLPQRLEKQVAHMWDKPEVGICAGNIEIIDSNGRVMPGKEQRKR
DLPFRRLDFDDLFLDRKPGPMAPTLMFRREALEKVGGFDPDIRLEDVYIELAVTKAGYVIDILGEVLAQYRK
HPTNTYKNARFMVDNVFKTYSQFSDHPDYEQVIMRFRNSMFLKCSNRDKVLARELLSGLPLKYWNEKTFRGI
ARLFFS*
AnnotationID:2644GeneID:2636
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:17
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl transferase
Cell Localization:()
Synonyms:PA5000
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00535
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00535, Glycos_transf_2, Glycosyl transferase.
CD-Length = 168 residues, 100.0% aligned
Score =  112 bits (280), Expect = 6e-26
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 4/170 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5275




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22420




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35061




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2636_cdd.html


    		




 
URL:

















    ReferenceID:35062




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2636_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2636
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4352
                           PA5000_tr
                           translation of PA5000
                           294
                           98.63
                           98.97
                           0
                           1498.0
     

     
     
127311
                           gb|AAG08385.1|AE004912_11
                           (AE004912) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           294
                           98.63
                           98.97
                           0
                           1498.0
     

     






      

          
GC ORFID: 45638How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5000Glimmer Score: 

          
Start: 5153498Stop: 5152614

          
Length: 885


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5000 translation of PA5000Homolog Bit Score 581.0

          
Other Homologs:  t_PA5000 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCTCGTCGATGATGGTTCGCAGCCATTGGTTTCCGTGATCATCGCTTCCTATAACCATGAAAAGTAC 
ATAGAAGCGAGCATCGCCAGCGTGGCTGCGCAGACGTACCGCAACGTGGAACTGCTGGTGGTGGACGATGGT 
TCCAGCGATGGCAGCGTCGAGCTTTTGCACGGGCTCCAGGCGAAGTACGGCTTCGACCTCAGGGTCCAGCAG 
AACCAGGGACTGTCGAAAACGCTCAACGAGGCGATCGCCAGGGCCCGGGGAAATCTCATCGTGCCCTTCGGG 
TCGGACGACATCATGTTGCCGCAACGCCTGGAGAAACAGGTGGCACACATGTGGGACAAGCCCGAGGTAGGT 
ATCTGCGCGGGCAATATCGAGATCATCGACTCCAATGGCCGGGTCATGCCGGGTAAGGAGCAGCGCAAACGC 
GACCTGCCTTTCCGCCGCCTCGACTTCGATGACCTGTTCCTGGACCGCAAGCCGGGCCCGATGGCGCCCACC 
TTGATGTTCCGGCGGGAAGCCCTGGAGAAGGTCGGCGGTTTCGATCCGGACATACGCCTGGAAGATGTCTAT 
ATCGAACTGGCGGTGACCAAGGCTGGCTACGTCATCGACATTCTTGGCGAGGTCCTCGCCCAGTACCGCAAG 
CATCCCACCAATACGTACAAGAACGCCCGTTTCATGGTGGACAACGTATTCAAGACGTACAGCCAGTTCAGC 
GATCACCCCGATTACGAGCAGGTGATCATGCGCTTCCGCAATTCGATGTTTCTCAAGTGCTCGAACCGGGAC 
AAGGTGCTGGCCCGGGAGCTGCTCTCCGGCTTGCCGCTGAAGTACTGGAACGAGAAGACCTTCCGCGGCATT 
GCGCGGTTGTTTTTCTCCTAG