ViewGene
Locus Name:
GeneID:
Location:

GeneID:2635
TrivialName: PA14_17790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17790
PAO1 Ortholog Locus:PA3594
Sequence Length:888
Protein Length:295
Start: 1529356
Stop: 1528469
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06982.1|AE004780_1 (AE004780) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 295/295 (100%), Positives = 295/295 (100%)
Sequence:
ATGGATCTCAGACAGCTTCGCTACTTCATCGCGGTCGCCGAGGAACTGCATTTCGGACGCGCCGCGGCTCGC
CTGTTCATCTCCCAGCCGGCGCTGAGCTTCGACATCAAGAAGCTGGAGGAACAGCTCGGAACCCAATTGCTG
CTGCGCAACAACAAGTCGGTGAAGCTCACCGGCGCCGGCCAGGTCCTGCTGGTGGAAGCGCGCAACCTGCTG
CTGCAGGCAGAGAAGGTGAAACGCCTGACCCAGCTATCCGCCGAGGGCGACGTCGGCCAGCTGCGCGTCGGC
TTCGTCAACTCCATGCTCTACCGCGGCCTGCCCAGGGCCATGTCCCGCTTCGAACGGGAGCACCCGAACATG
GAGGTGGTGCTCGGCGAAATGAACAGCGCGGAGCAGGCCCAGGCGTTGCAGCGCGGGCAGATCGACCTGGGC
TTCGTGCACTGGGGCAGGCTGCCGGCGGAAATCGTCTCCGAACCCTTGATCAGCGACCCGTTCCTCTGTTGC
CTGCCCGCCGGGCACCGCCTGGCAGGCCAGGCGCGTCTGGACCTCGCCGAACTGCGCGACGAAGACTTCATC
CTCTTCCCGCGCCATGTCTCCCCGCACTACCACGACCTGATCATCGCCCGCTGCGTGGACGCCGGCTTCAGC
CCGCGCATCCGCCACGAGGCGCGCCTGTGGCAGACCGTCGCCGCCATGGTCGGTCTCGGCATGGGCGTCGCG
CTGATCCCGGAGACCCTCTGCCTGGCCTGGCGGAACGAGGTGCGCTACCTGGAGATCGAGCCGGCCGGCGCG
CGTTCGGAGATCCACGCGATCCTTCCGGCCAGCGAACCTTCCCGGGCGGCGCAGGCGTTCCTGGCGACGCTG
AAGAGCGGCCTGGATGACGCCTGA
Translation:
MDLRQLRYFIAVAEELHFGRAAARLFISQPALSFDIKKLEEQLGTQLLLRNNKSVKLTGAGQVLLVEARNLL
LQAEKVKRLTQLSAEGDVGQLRVGFVNSMLYRGLPRAMSRFEREHPNMEVVLGEMNSAEQAQALQRGQIDLG
FVHWGRLPAEIVSEPLISDPFLCCLPAGHRLAGQARLDLAELRDEDFILFPRHVSPHYHDLIIARCVDAGFS
PRIRHEARLWQTVAAMVGLGMGVALIPETLCLAWRNEVRYLEIEPAGARSEIHAILPASEPSRAAQAFLATL
KSGLDDA*
AnnotationID:2643GeneID:2635
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 11:11:15
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional regulator
Cell Localization:()
Synonyms:PA3594
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31483.1| (BX640440) probable LysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 297

 Score =  257 bits (656), Expect = 6e-68
 Identities = 137/295 (46%), Positives = 188/295 (63%)

>gb|AAP27478.1| (AE017035) als operon regulatory protein AlsR, putative [Bacillus
           anthracis str. Ames]
          Length = 301

 Score =  194 bits (493), Expect = 5e-49
 Identities = 102/260 (39%), Positives = 158/260 (60%), Gaps = 2/260 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.0% aligned
Score =  135 bits (340), Expect = 1e-32
Identities = 104/300 (34%), Positives = 148/300 (49%), Gaps = 11/300 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
The structure of this domain is known and is similar to the 
periplasmic binding proteins.
CD-Length = 209 residues, 100.0% aligned
Score =  127 bits (320), Expect = 3e-30
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 5/211 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5273




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22418




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31948




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2635_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2635
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4351
                           PA3594_tr
                           translation of PA3594
                           295
                           99.99
                           99.99
                           0
                           1497.0
     

     
     
127289
                           gb|AAG06982.1|AE004780_1
                           (AE004780) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           295
                           99.99
                           99.99
                           0
                           1497.0
     

     
     
127292
                           emb|CAE31594.1|
                           (BX640440) LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           299
                           46.82
                           61.20
                           10
                           637.0
     

     
     
127293
                           emb|CAE34409.1|
                           (BX640449) putative LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           301
                           46.17
                           62.79
                           7
                           627.0
     

     
     
127294
                           emb|CAE38895.1|
                           (BX640434) putative LysR-family transcriptional regulator [Bordetella parapertussis]
                           301
                           46.17
                           62.79
                           7
                           626.0
     

     






      

          
GC ORFID: 45637How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3594Glimmer Score: 

          
Start: 3424580Stop: 3425467

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3594 translation of PA3594Homolog Bit Score 581.0

          
Other Homologs:  t_PA3594 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCTCAGACAGCTTCGCTACTTCATCGCGGTCGCCGAGGAACTGCATTTCGGACGCGCCGCGGCTCGC 
CTGTTCATCTCCCAGCCGGCGCTGAGCTTCGACATCAAGAAGCTGGAGGAACAGCTCGGAACCCAATTGCTG 
CTGCGCAACAACAAGTCGGTGAAGCTCACCGGCGCCGGCCAGGTCCTGCTGGTGGAAGCGCGCAACCTGCTG 
CTGCAGGCAGAGAAGGTGAAACGCCTGACCCAGCTATCCGCCGAGGGCGACGTCGGCCAGCTGCGCGTCGGC 
TTCGTCAACTCCATGCTCTACCGCGGCCTGCCCAGGGCCATGTCCCGCTTCGAACGGGAGCACCCGAACATG 
GAGGTGGTGCTCGGCGAAATGAACAGCGCGGAGCAGGCCCAGGCGTTGCAGCGCGGGCAGATCGACCTGGGC 
TTCGTGCACTGGGGCAGGCTGCCGGCGGAAATCGTCTCCGAACCCTTGATCAGCGACCCGTTCCTCTGTTGC 
CTGCCCGCCGGGCACCGCCTGGCAGGCCAGGCGCGTCTGGACCTCGCCGAACTGCGCGACGAAGACTTCATC 
CTCTTCCCGCGCCATGTCTCCCCGCACTACCACGACCTGATCATCGCCCGCTGCGTGGACGCCGGCTTCAGC 
CCGCGCATCCGCCACGAGGCGCGCCTGTGGCAGACCGTCGCCGCCATGGTCGGTCTCGGCATGGGCGTCGCG 
CTGATCCCGGAGACCCTCTGCCTGGCCTGGCGGAACGAGGTGCGCTACCTGGAGATCGAGCCGGCCGGCGCG 
CGTTCGGAGATCCACGCGATCCTTCCGGCCAGCGAACCTTCCCGGGCGGCGCAGGCGTTCCTGGCGACGCTG 
AAGAGCGGCCTGGATGACGCCTGA