ViewGene
Locus Name:
GeneID:
Location:

GeneID:2633
TrivialName: PA14_37140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37140
PAO1 Ortholog Locus:PA2121
Sequence Length:906
Protein Length:301
Start: 3309523
Stop: 3310428
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05509.1|AE004639_7 (AE004639) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 298/301 (99%), Positives = 300/301 (99%)
Sequence:
ATGAAGCTGAACTTGCAGCAGCTCGACCTCAACCTGCTTCTGGTCTTCGATGCCCTGATGCGCGAACGCAAC
CTGTCGCGCGCGGCGATCCGCCTGCATCGCAGCCAGCCGGCGGTGAGCAACGCCCTCGCCCGCCTGCGCGAA
CAGCTCGACCAGCCGCTGTTCCGGCGCACCGCCAAGGGCCTGGAACCCACCGCCGCCGCCCTCGCCCTGTAC
GTGCCGGTGCGCCAGGCCCTGCATCTGCTGCAGGCCGGCCTTGGCTCCCAGGAAACCTTCGATCCGCACACT
GCGCGGACCTTTCGCCTGACGATGAACGACTATGCCCAGTTGCGCCTGCTGCCGGGCCTGGTGACCCGCTTG
AAGACCCTGGCCCCGCAGGTGACGCTGGAGGTGCGGCCCGACGAAGGCGCCTCGATCCCGGCGCAGCTGGCC
AGCGGCGAACTCGACCTGGCGATCGACTACCTGTACTTCGACGAGCCTGAGCTGGCCTACCGGCCGGTCGGC
GAGGAACGCCTGGTGGTGATCGGCCGCCAGGGCCATCCGGCCTTCCGCGGCGGCCTCGACCGCGCCGCCTAC
GAGGCCGCGCAGCACGTCTCGATCCTGCCGCGGGTGGGGCGCGGCAGTCCGCTGGAGATCGTCCTCGGCTCG
GCCAGGGTGCAGCGCCGGGTGCAATTGCTGGTGCCGCACTACCTGACCATCCCGGCCATCGTCGCCAGCACC
GAGCTGCTCGGCACCGTGCCGCGCCGCCTGGCCGAGCGTTTCGCCGGCAGCCATGGTCTGCAACTGGCGGAC
GTCCCCTTCGAGATGGCCCCGGTGCAGGTCAACCTGATCTGGCATCGCCAGCAGGAAGCGACGCCCGGCCTG
CAATGGCTGCGCGAGCAGATCGTGCAGATCGAACAGGGCTGA
Translation:
MKLNLQQLDLNLLLVFDALMRERNLSRAAIRLHRSQPAVSNALARLREQLDQPLFRRTAKGLEPTAAALALY
VPVRQALHLLQAGLGSQETFDPHTARTFRLTMNDYAQLRLLPGLVTRLKTLAPQVTLEVRPDEGASIPAQLA
SGELDLAIDYLYFDEPELAYRPVGEERLVVIGRQGHPAFRGGLDRAAYEAAQHVSILPRVGRGSPLEIVLGS
ARVQRRVQLLVPHYLTIPAIVASTELLGTVPRRLAERFAGSHGLQLADVPFEMAPVQVNLIWHRQQEATPGL
QWLREQIVQIEQG*
AnnotationID:2641GeneID:2633
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:23
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2121
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68048.1|AE016437_5 (AE016783) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 308

 Score =  197 bits (501), Expect = 6e-50
 Identities = 115/297 (38%), Positives = 169/297 (56%), Gaps = 5/297 (1%)

>gb|AAO56245.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 309

 Score =  188 bits (477), Expect = 4e-47
 Identities = 113/301 (37%), Positives = 170/301 (56%), Gaps = 7/301 (2%)

>gb|AAL50025.1| (AF169302) putative regulatory protein [Burkholderia cepacia]
          Length = 301

 Score =  186 bits (472), Expect = 1e-46
 Identities = 103/297 (34%), Positives = 170/297 (57%), Gaps = 1/297 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.3% aligned
Score =  117 bits (294), Expect = 1e-27
Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 5/292 (1%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  96.7% aligned
Score = 95.8 bits (238), Expect = 6e-21
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 1/202 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22414




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32600




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2633_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2633
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4349
                           PA2121_tr
                           translation of PA2121
                           301
                           99.00
                           99.66
                           0
                           1498.0
     

     
     
127286
                           gb|AAG05509.1|AE004639_7
                           (AE004639) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           301
                           99.00
                           99.66
                           0
                           1498.0
     

     
     
127287
                           gb|AAL76198.1|AF379638_1
                           (AF379638) LysR-type regulatory protein [Comamonas sp. JS765]
                           302
                           18.54
                           26.82
                           180
                           251.0
     

     






      

          
GC ORFID: 45635How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2121Glimmer Score: 

          
Start: 1644391Stop: 1643486

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2121 translation of PA2121Homolog Bit Score 581.0

          
Other Homologs:  t_PA2121 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCTGAACTTGCAGCAGCTCGACCTCAACCTGCTTCTGGTCTTCGATGCCCTGATGCGCGAACGCAAC 
CTGTCGCGCGCGGCGATCCGCCTGCATCGCAGCCAGCCGGCGGTGAGCAACGCCCTCGCCCGCCTGCGCGAA 
CAGCTCGACCAGCCGCTGTTCCGGCGCACCGCCAAGGGCCTGGAACCCACCGCCGCCGCCCTCGCCCTGTAC 
GTGCCGGTGCGCCAGGCCCTGCATCTGCTGCAGGCCGGCCTTGGCTCCCAGGAAACCTTCGATCCGCACACT 
GCGCGGACCTTTCGCCTGACGATGAACGACTATGCCCAGTTGCGCCTGCTGCCGGGCCTGGTGACCCGCTTG 
AAGACCCTGGCCCCGCAGGTGACGCTGGAGGTGCGGCCCGACGAAGGCGCCTCGATCCCGGCGCAGCTGGCC 
AGCGGCGAACTCGACCTGGCGATCGACTACCTGTACTTCGACGAGCCTGAGCTGGCCTACCGGCCGGTCGGC 
GAGGAACGCCTGGTGGTGATCGGCCGCCAGGGCCATCCGGCCTTCCGCGGCGGCCTCGACCGCGCCGCCTAC 
GAGGCCGCGCAGCACGTCTCGATCCTGCCGCGGGTGGGGCGCGGCAGTCCGCTGGAGATCGTCCTCGGCTCG 
GCCAGGGTGCAGCGCCGGGTGCAATTGCTGGTGCCGCACTACCTGACCATCCCGGCCATCGTCGCCAGCACC 
GAGCTGCTCGGCACCGTGCCGCGCCGCCTGGCCGAGCGTTTCGCCGGCAGCCATGGTCTGCAACTGGCGGAC 
GTCCCCTTCGAGATGGCCCCGGTGCAGGTCAACCTGATCTGGCATCGCCAGCAGGAAGCGACGCCCGGCCTG 
CAATGGCTGCGCGAGCAGATCGTGCAGATCGAACAGGGCTGA