ViewGene
Locus Name:
GeneID:
Location:

GeneID:2632
TrivialName: PA14_40490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40490
PAO1 Ortholog Locus:PA1857
Sequence Length:924
Protein Length:307
Start: 3616827
Stop: 3617750
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05246.1|AE004611_11 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 306/307 (99%), Positives = 307/307 (100%)
Sequence:
ATGGCCGGAGCCAGCCTCCTCACCCTCCTCGACGATATCGCCGCGGTGCTCGACGACGTCTCGCTGATGACC
AAGGTCGCCGCGAAGAAGACCGCCGGCGTTCTCGGCGACGACCTGGCGCTGAACGCCCAGCAGGTCACCGGG
GTCAACGCCGACCGCGAACTGCCGGTGGTCTGGGCGGTGGCCAAGGGCTCGCTGCGGAACAAGGCGATCCTC
GTTCCCGCCGCCCTGCTGATCAGCGCCTTCGCGCCCTGGGCGGTGATCCCGCTGCTGATGCTCGGCGGCGCC
TACCTGTGCTTCGAGGGCTTCGAGAAGATCGCCCACAAGTACCTGCCCCATGACGACGAGCACGCCGACGAG
GCAGCGCTGGCGGCCAATGTCGACGTGGCTGCCCTGGAAAAGCAGAAGATCGGCGGCGCGATCCGTACCGAC
TTCATCCTCTCCGCGGAAATCATCGCCATCACCCTCGGTACCGTCGCCGAATCCAGCTTCACCACCCAGGTG
CTGGTGCTGGTCGGCATCGCCCTGGTGATGACCATCGGCGTCTACGGTCTGGTCGCCGGCATCGTCAAGCTG
GACGACGCCGGCCTCTATCTGTCCAAGCGCGACAGCGGCTTCGCCCAAGGGCTCGGCGGCGCCATCCTGCGC
ACCGCGCCGTACCTGATGAAAGGCCTGTCGGTGGTCGGCATGGCGGCGATGTTCATGGTCGGCGGCGGCATC
CTCACCCACGGTATCCCGGTGGTCCACCACGCCATCGAACAGGCCGCGCAGAGCGTCGCCGGCATCGCCACG
CTGGGCCCGTTGCTGGCGGCGATCACCCCGACCCTGCTGAACTTCCTGTTCGGCATCGTCGCCGGCGCGGTG
GTGCTGGCGGGGGTGCTGCTGGTCAAGCGCCTGCTGCCGAAGAAGAAAAAGACTGGCTGA
Translation:
MAGASLLTLLDDIAAVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWAVAKGSLRNKAIL
VPAALLISAFAPWAVIPLLMLGGAYLCFEGFEKIAHKYLPHDDEHADEAALAANVDVAALEKQKIGGAIRTD
FILSAEIIAITLGTVAESSFTTQVLVLVGIALVMTIGVYGLVAGIVKLDDAGLYLSKRDSGFAQGLGGAILR
TAPYLMKGLSVVGMAAMFMVGGGILTHGIPVVHHAIEQAAQSVAGIATLGPLLAAITPTLLNFLFGIVAGAV
VLAGVLLVKRLLPKKKKTG*
AnnotationID:2640GeneID:2632
AnnotatorUID: diggins
Modification Date/Time: 2005-01-11 12:12:29
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yedI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57141.1| (AE016869) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 302

 Score =  350 bits (899), Expect = 5e-96
 Identities = 197/307 (64%), Positives = 234/307 (76%), Gaps = 19/307 (6%)

>gb|AAL20899.1| (AE008788) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 303

 Score =  338 bits (866), Expect = 3e-92
 Identities = 187/305 (61%), Positives = 227/305 (74%), Gaps = 13/305 (4%)

>gb|AAN80836.1|AE016762_89 (AE016762) Hypothetical protein yedI [Escherichia coli CFT073]
          Length = 305

 Score =  333 bits (855), Expect = 6e-91
 Identities = 178/304 (58%), Positives = 219/304 (72%), Gaps = 11/304 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5267




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22412




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37054




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2632_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2632
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4348
                           PA1857_tr
                           translation of PA1857
                           307
                           99.67
                           99.99
                           0
                           1498.0
     

     
     
127258
                           gb|AAG05246.1|AE004611_11
                           (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           307
                           99.67
                           99.99
                           0
                           1498.0
     

     
     
127259
                           gb|AAN69874.1|AE016626_9
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           314
                           65.60
                           75.79
                           17
                           974.0
     

     
     
127262
                           gb|AAM35314.1|
                           (AE011668) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           323
                           63.15
                           73.06
                           26
                           911.0
     

     
     
127261
                           gb|AAO57141.1|
                           (AE016869) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           315
                           62.53
                           74.92
                           21
                           914.0
     

     






      

          
GC ORFID: 45634How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1857Glimmer Score: 

          
Start: 1337083Stop: 1336160

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1857 translation of PA1857Homolog Bit Score 581.0

          
Other Homologs:  t_PA1857 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGAGCCAGCCTCCTCACCCTCCTCGACGATATCGCCGCGGTGCTCGACGACGTCTCGCTGATGACC 
AAGGTCGCCGCGAAGAAGACCGCCGGCGTTCTCGGCGACGACCTGGCGCTGAACGCCCAGCAGGTCACCGGG 
GTCAACGCCGACCGCGAACTGCCGGTGGTCTGGGCGGTGGCCAAGGGCTCGCTGCGGAACAAGGCGATCCTC 
GTTCCCGCCGCCCTGCTGATCAGCGCCTTCGCGCCCTGGGCGGTGATCCCGCTGCTGATGCTCGGCGGCGCC 
TACCTGTGCTTCGAGGGCTTCGAGAAGATCGCCCACAAGTACCTGCCCCATGACGACGAGCACGCCGACGAG 
GCAGCGCTGGCGGCCAATGTCGACGTGGCTGCCCTGGAAAAGCAGAAGATCGGCGGCGCGATCCGTACCGAC 
TTCATCCTCTCCGCGGAAATCATCGCCATCACCCTCGGTACCGTCGCCGAATCCAGCTTCACCACCCAGGTG 
CTGGTGCTGGTCGGCATCGCCCTGGTGATGACCATCGGCGTCTACGGTCTGGTCGCCGGCATCGTCAAGCTG 
GACGACGCCGGCCTCTATCTGTCCAAGCGCGACAGCGGCTTCGCCCAAGGGCTCGGCGGCGCCATCCTGCGC 
ACCGCGCCGTACCTGATGAAAGGCCTGTCGGTGGTCGGCATGGCGGCGATGTTCATGGTCGGCGGCGGCATC 
CTCACCCACGGTATCCCGGTGGTCCACCACGCCATCGAACAGGCCGCGCAGAGCGTCGCCGGCATCGCCACG 
CTGGGCCCGTTGCTGGCGGCGATCACCCCGACCCTGCTGAACTTCCTGTTCGGCATCGTCGCCGGCGCGGTG 
GTGCTGGCGGGGGTGCTGCTGGTCAAGCGCCTGCTGCCGAAGAAGAAAAAGACTGGCTGA