|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG05215.1|AE004609_2 (AE004609) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 299/301 (99%), Positives = 300/301 (99%)
|
Sequence:
ATGGCCGACTTGCGCCAGTTCCGCCAGTTCGTCGCGGTTGCCGAGGAGCTGAGCTTCCGCCGCGCCGCTGAG
CGCCTGCACATGGCCCAGCCACCGCTGACCACCGCGATCCGGCGGCTGGAAGAAGAAGTCGGCGCCAGCCTG
CTGGAGCGTGACAACCGTATCCATCGCCTGACGCCGGCGGGCCGCGCGTTCCTCGACGAAGCCCGGCGCACC
CTGGCCCAGGCCGAACGCACCCTGGCGGCCGCGCGCAGCGCCGCCAGCGGACGCAGAACGTTGCGCCTGGCG
TTCGTCGACAGCACCATCAATATTCTGCTACCGCGCATACTCCAGGCGTTCCGCCAACAGCATGGCGCGCTG
GACTTCCAGCTCCAGGAAGACACCACCGCGGGGCAACTGGAGGCGCTGCGCGAAGACCGCATCGATGCCGGC
CTGATCGTCCTGCCGGTCGACCGCCAGCCCGGCCTGTACACGCATCTACTGGTGGACGGCGACATGCGCGTG
GCATTGCCCGAAGGCCATCGGCTGGCACGCCATGCGCGCCTGCGCCTGGAACAACTGGCCGGAGAACCCTGG
CTGCTGTTCCCAAGGCACTATGGGCCGGGCATGCACGACCTGATCGTCGCCGCCTGCGCGGCAGCCGGCTTC
GTCCCGGAGGTGGTGCAGGAGGCGCGGCAGATGCAGACCATCGCCGGGCTGGTGGCCGGCGGCATCGGCGTC
GCGCTAGTGCCTTCGCTGCTACAACCGTTGCGCCCGCCGGGGGTCACCTTTCGTCCCCTGCAAGGGCGGCGG
GCGCGAATTCCCTATCGGCTGGCGTTGGCCTACCGCACGCCGTCGGAACTCATCGAACGCTTTCGCGAAACC
GCCCAGGCGATCGCCGCCGCCCCGGCTTTTCGCATGGCCTAG |
Translation:
MADLRQFRQFVAVAEELSFRRAAERLHMAQPPLTTAIRRLEEEVGASLLERDNRIHRLTPAGRAFLDEARRT
LAQAERTLAAARSAASGRRTLRLAFVDSTINILLPRILQAFRQQHGALDFQLQEDTTAGQLEALREDRIDAG
LIVLPVDRQPGLYTHLLVDGDMRVALPEGHRLARHARLRLEQLAGEPWLLFPRHYGPGMHDLIVAACAAAGF
VPEVVQEARQMQTIAGLVAGGIGVALVPSLLQPLRPPGVTFRPLQGRRARIPYRLALAYRTPSELIERFRET
AQAIAAAPAFRMA* |
AnnotationID:2639 | GeneID:2631 |
|
Modification Date/Time: |
2005-03-01 20:08:29 |
|
|
|
GeneProduct: | putative LysR family transcriptional regulatory protein |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (25) Transcriptional regulators |
|
Alternate Gene Product Name: | |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | |
|
|
|
|
Homology: | >emb|CAE42065.1| (BX640416) probable LysR-family transcriptional regulator
[Bordetella pertussis]
Length = 299
Score = 200 bits (508), Expect = 1e-50
Identities = 124/292 (42%), Positives = 171/292 (58%), Gaps = 3/292 (1%)
>emb|CAE32753.1| (BX640443) probable LysR-family transcriptional regulator
[Bordetella bronchiseptica]
Length = 316
Score = 199 bits (506), Expect = 2e-50
Identities = 124/292 (42%), Positives = 170/292 (58%), Gaps = 3/292 (1%)
>gb|AAM39620.1| (AE012126) transcriptional regulator lysR family [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 295
Score = 189 bits (479), Expect = 2e-47
Identities = 113/274 (41%), Positives = 157/274 (57%), Gaps = 4/274 (1%) |
|
Structural Features: | COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 97.3% aligned
Score = 117 bits (292), Expect = 2e-27
Identities = 105/295 (35%), Positives = 140/295 (47%), Gaps = 8/295 (2%)
pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 106 bits (266), Expect = 3e-24
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 6/212 (2%)
|
|
|
|
|
|