ViewGene

Locus Name:
GeneID:
Location:

GeneID:2631
TrivialName: PA14_40910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40910
PAO1 Ortholog Locus:PA1826
Sequence Length:906
Protein Length:301
Start: 3648743
Stop: 3649648
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05215.1|AE004609_2 (AE004609) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 299/301 (99%), Positives = 300/301 (99%)
Sequence:
ATGGCCGACTTGCGCCAGTTCCGCCAGTTCGTCGCGGTTGCCGAGGAGCTGAGCTTCCGCCGCGCCGCTGAG
CGCCTGCACATGGCCCAGCCACCGCTGACCACCGCGATCCGGCGGCTGGAAGAAGAAGTCGGCGCCAGCCTG
CTGGAGCGTGACAACCGTATCCATCGCCTGACGCCGGCGGGCCGCGCGTTCCTCGACGAAGCCCGGCGCACC
CTGGCCCAGGCCGAACGCACCCTGGCGGCCGCGCGCAGCGCCGCCAGCGGACGCAGAACGTTGCGCCTGGCG
TTCGTCGACAGCACCATCAATATTCTGCTACCGCGCATACTCCAGGCGTTCCGCCAACAGCATGGCGCGCTG
GACTTCCAGCTCCAGGAAGACACCACCGCGGGGCAACTGGAGGCGCTGCGCGAAGACCGCATCGATGCCGGC
CTGATCGTCCTGCCGGTCGACCGCCAGCCCGGCCTGTACACGCATCTACTGGTGGACGGCGACATGCGCGTG
GCATTGCCCGAAGGCCATCGGCTGGCACGCCATGCGCGCCTGCGCCTGGAACAACTGGCCGGAGAACCCTGG
CTGCTGTTCCCAAGGCACTATGGGCCGGGCATGCACGACCTGATCGTCGCCGCCTGCGCGGCAGCCGGCTTC
GTCCCGGAGGTGGTGCAGGAGGCGCGGCAGATGCAGACCATCGCCGGGCTGGTGGCCGGCGGCATCGGCGTC
GCGCTAGTGCCTTCGCTGCTACAACCGTTGCGCCCGCCGGGGGTCACCTTTCGTCCCCTGCAAGGGCGGCGG
GCGCGAATTCCCTATCGGCTGGCGTTGGCCTACCGCACGCCGTCGGAACTCATCGAACGCTTTCGCGAAACC
GCCCAGGCGATCGCCGCCGCCCCGGCTTTTCGCATGGCCTAG
Translation:
MADLRQFRQFVAVAEELSFRRAAERLHMAQPPLTTAIRRLEEEVGASLLERDNRIHRLTPAGRAFLDEARRT
LAQAERTLAAARSAASGRRTLRLAFVDSTINILLPRILQAFRQQHGALDFQLQEDTTAGQLEALREDRIDAG
LIVLPVDRQPGLYTHLLVDGDMRVALPEGHRLARHARLRLEQLAGEPWLLFPRHYGPGMHDLIVAACAAAGF
VPEVVQEARQMQTIAGLVAGGIGVALVPSLLQPLRPPGVTFRPLQGRRARIPYRLALAYRTPSELIERFRET
AQAIAAAPAFRMA*
AnnotationID:2639GeneID:2631
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 20:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative LysR family transcriptional regulatory protein
Cell Localization:()
Synonyms:PA1826
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE42065.1| (BX640416) probable LysR-family transcriptional regulator
           [Bordetella pertussis]
          Length = 299

 Score =  200 bits (508), Expect = 1e-50
 Identities = 124/292 (42%), Positives = 171/292 (58%), Gaps = 3/292 (1%)

>emb|CAE32753.1| (BX640443) probable LysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 316

 Score =  199 bits (506), Expect = 2e-50
 Identities = 124/292 (42%), Positives = 170/292 (58%), Gaps = 3/292 (1%)

>gb|AAM39620.1| (AE012126) transcriptional regulator lysR family [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 295

 Score =  189 bits (479), Expect = 2e-47
 Identities = 113/274 (41%), Positives = 157/274 (57%), Gaps = 4/274 (1%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.3% aligned
Score =  117 bits (292), Expect = 2e-27
Identities = 105/295 (35%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues, 100.0% aligned
Score =  106 bits (266), Expect = 3e-24
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 6/212 (2%)
Genomic Context:
Comment:
ReferenceID:5265
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22410
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37098
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2631_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2631

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4347 PA1826_tr translation of PA1826 301 99.33 99.66 0 1498.0
127236 gb|AAG05215.1|AE004609_2 (AE004609) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 301 99.33 99.66 0 1498.0
127237 dbj|BAC91301.1| (AP006579) LysR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] 308 42.85 58.76 14 533.0
127238 emb|CAE42065.1| (BX640416) probable LysR-family transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I] 304 40.78 56.25 8 504.0
127250 gb|AAN33639.1|AE014543_3 (AE014543) transcriptional regulator, LysR family [Brucella suis 1330] 318 39.30 51.88 40 452.0
GC ORFID: 45633How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1826Glimmer Score:
Start: 1305167Stop: 1304262
Length: 906
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1826 translation of PA1826Homolog Bit Score 581.0
Other Homologs: t_PA1826 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGACTTGCGCCAGTTCCGCCAGTTCGTCGCGGTTGCCGAGGAGCTGAGCTTCCGCCGCGCCGCTGAG
CGCCTGCACATGGCCCAGCCACCGCTGACCACCGCGATCCGGCGGCTGGAAGAAGAAGTCGGCGCCAGCCTG
CTGGAGCGTGACAACCGTATCCATCGCCTGACGCCGGCGGGCCGCGCGTTCCTCGACGAAGCCCGGCGCACC
CTGGCCCAGGCCGAACGCACCCTGGCGGCCGCGCGCAGCGCCGCCAGCGGACGCAGAACGTTGCGCCTGGCG
TTCGTCGACAGCACCATCAATATTCTGCTACCGCGCATACTCCAGGCGTTCCGCCAACAGCATGGCGCGCTG
GACTTCCAGCTCCAGGAAGACACCACCGCGGGGCAACTGGAGGCGCTGCGCGAAGACCGCATCGATGCCGGC
CTGATCGTCCTGCCGGTCGACCGCCAGCCCGGCCTGTACACGCATCTACTGGTGGACGGCGACATGCGCGTG
GCATTGCCCGAAGGCCATCGGCTGGCACGCCATGCGCGCCTGCGCCTGGAACAACTGGCCGGAGAACCCTGG
CTGCTGTTCCCAAGGCACTATGGGCCGGGCATGCACGACCTGATCGTCGCCGCCTGCGCGGCAGCCGGCTTC
GTCCCGGAGGTGGTGCAGGAGGCGCGGCAGATGCAGACCATCGCCGGGCTGGTGGCCGGCGGCATCGGCGTC
GCGCTAGTGCCTTCGCTGCTACAACCGTTGCGCCCGCCGGGGGTCACCTTTCGTCCCCTGCAAGGGCGGCGG
GCGCGAATTCCCTATCGGCTGGCGTTGGCCTACCGCACGCCGTCGGAACTCATCGAACGCTTTCGCGAAACC
GCCCAGGCGATCGCCGCCGCCCCGGCTTTTCGCATGGCCTAG