ViewGene
Locus Name:
GeneID:
Location:

GeneID:2630
TrivialName: PA14_44510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44510
PAO1 Ortholog Locus:PA1542
Sequence Length:837
Protein Length:278
Start: 3963327
Stop: 3964163
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04931.1|AE004582_9 (AE004582) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGACTGCCACTGGCACCGCCTCCCCGGTTCGCGCCAATTTCCCCGTGCGGCGGATGGATTTCAGCTTCAGC
GAAACCCCGAAGTACTGGTGGGACGGCCAACCCTTCATGACCCAGTTCATGAACAACCTGTCCTCGCTCTTC
CCCTACGGCGAAAAATTCTTCGTCGATAGCGTGCGCGCGGTGCGCGACCGCCTGGAGGATCCGCAACTGAAG
AAGGACGTCAGCGCCTTCATCGGCCAGGAGGCGATGCACTCGAAGGAGCATGCCGCCTACAACGAATATGCC
GAGGAGCACGGGGTCGACCTGGAGTGCCTCGAACTGCGGATCAAGGTCCTGCTGGAAAACGTCAGCAAGGTC
ACCACCAGGAAACACCAGTTGGCGATCACCTGCGCCCTCGAGCATTTCACCGCGACCATGGCCGCGCAGTTG
CTCAAGCGCGAAGACCTGACCATCCAGATGCAGTCGCCGAAGATGTACAAGCTGTGGATGTGGCATGCCATC
GAGGAGAACGAACACAAGAATGTCGCCTACGATGTGTACCAGAAAGTCTACGGCGGCTACTTCACCCGGGTT
CTGGTGATGATGCTGACCACCCTGATGTTCTTCGGCGTCATCGGCTGGTTCCAGCTCGACCTGCTACGCAAG
GACGGCCAATTGTTCAACTGGCGCTCCTGGAAGCATGGCCTGGGCACCCTGTTCGGCCTGCGCAAGGGCTTC
TTCACCCGCCTGCTGCTGCCCTACCTGGACTACTACCGGCCGGGCTTCCACCCCAGCGACCACGACACCGCG
AAACTGGAGAAATACTGGAAGGACAAACTGGCCTTCGCCGATTGA
Translation:
MTATGTASPVRANFPVRRMDFSFSETPKYWWDGQPFMTQFMNNLSSLFPYGEKFFVDSVRAVRDRLEDPQLK
KDVSAFIGQEAMHSKEHAAYNEYAEEHGVDLECLELRIKVLLENVSKVTTRKHQLAITCALEHFTATMAAQL
LKREDLTIQMQSPKMYKLWMWHAIEENEHKNVAYDVYQKVYGGYFTRVLVMMLTTLMFFGVIGWFQLDLLRK
DGQLFNWRSWKHGLGTLFGLRKGFFTRLLLPYLDYYRPGFHPSDHDTAKLEKYWKDKLAFAD*
AnnotationID:2638GeneID:2630
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 09:09:55
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1542
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3687, COG3687, Predicted metal-dependent hydrolase
CD-Length = 280 residues,  99.3% aligned
Score =  378 bits (973), Expect = 3e-106
Identities = 124/279 (44%), Positives = 159/279 (56%), Gaps = 2/279 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5263




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22408




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37313




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2630_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2630
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4346
                           PA1542_tr
                           translation of PA1542
                           278
                           99.99
                           99.99
                           0
                           1497.0
     

     
     
127234
                           gb|AAG04931.1|AE004582_9
                           (AE004582) hypothetical protein PA1542 [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1497.0
     

     
     
127235
                           emb|CAA40908.1|
                           (X57736) hypothetical protein [Pseudomonas aeruginosa]
                           278
                           24.82
                           24.82
                           209
                           374.0
     

     






      

          
GC ORFID: 45632How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1542Glimmer Score: 

          
Start: 990582Stop: 989746

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1542 translation of PA1542Homolog Bit Score 581.0

          
Other Homologs:  t_PA0830 (ORF: BLASTX 144.0), t_PA1542 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGCCACTGGCACCGCCTCCCCGGTTCGCGCCAATTTCCCCGTGCGGCGGATGGATTTCAGCTTCAGC 
GAAACCCCGAAGTACTGGTGGGACGGCCAACCCTTCATGACCCAGTTCATGAACAACCTGTCCTCGCTCTTC 
CCCTACGGCGAAAAATTCTTCGTCGATAGCGTGCGCGCGGTGCGCGACCGCCTGGAGGATCCGCAACTGAAG 
AAGGACGTCAGCGCCTTCATCGGCCAGGAGGCGATGCACTCGAAGGAGCATGCCGCCTACAACGAATATGCC 
GAGGAGCACGGGGTCGACCTGGAGTGCCTCGAACTGCGGATCAAGGTCCTGCTGGAAAACGTCAGCAAGGTC 
ACCACCAGGAAACACCAGTTGGCGATCACCTGCGCCCTCGAGCATTTCACCGCGACCATGGCCGCGCAGTTG 
CTCAAGCGCGAAGACCTGACCATCCAGATGCAGTCGCCGAAGATGTACAAGCTGTGGATGTGGCATGCCATC 
GAGGAGAACGAACACAAGAATGTCGCCTACGATGTGTACCAGAAAGTCTACGGCGGCTACTTCACCCGGGTT 
CTGGTGATGATGCTGACCACCCTGATGTTCTTCGGCGTCATCGGCTGGTTCCAGCTCGACCTGCTACGCAAG 
GACGGCCAATTGTTCAACTGGCGCTCCTGGAAGCATGGCCTGGGCACCCTGTTCGGCCTGCGCAAGGGCTTC 
TTCACCCGCCTGCTGCTGCCCTACCTGGACTACTACCGGCCGGGCTTCCACCCCAGCGACCACGACACCGCG 
AAACTGGAGAAATACTGGAAGGACAAACTGGCCTTCGCCGATTGA