ViewGene
Locus Name:
GeneID:
Location:

GeneID:263
TrivialName: PA14_20870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20870
PAO1 Ortholog Locus:PA3339
Sequence Length:2187
Protein Length:728
Start: 1799707
Stop: 1797521
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06727.1|AE004756_5 (AE004756) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 726/728 (99%), Positives = 727/728 (99%)
Sequence:
ATGCGCCGCCTGCTGCTCGTACTGCTGCTCCTGCTTCCCCTGTCCGCCCTCGCCACGGAGGCCCGGCCGAAG
ATCGGCCTGGTCCTCTCCGGAGGTGCCGCCCGTGGCCTGGCCCATATCGGCGTGCTCAAGGCCCTCGACGAA
CAGGGCATCCAGATCGACGCCATCGCCGGCACCAGCATGGGCGCGGTGGTCGGCGGCCTGTACGCCTCCGGC
TACACCCCCGCCGAACTGGAGCGCATCGCCCTGGAGATGGACTGGCAGCAGGCGCTGTCCGACGCGCCGCCG
CGCAAGGACGTGCCGTTCCGGCGCAAGCAGGACGACCGCGACTTCCTGGTCAAGCAGAAGATCAGCTTCCGC
GACGACGGCACCCTCGGCCTGCCGCTGGGGGTGATCCAGGGCCAGAACCTGGCGATGGTGCTGGAAAGCCTG
CTGGTGCACACCAGCGACAACCGCGACTTCGACAAGCTGGCGATCCCCTTCCGCGCCGTCTCCACCGATATC
GCAACCGGCGAGAAAGTGGTGTTCCGCAAGGGCCACCTGCCCCAGGCGATCCGCGCCAGCATGTCGATCCCC
GCCGTGTTCGCCCCGGTGGAGATCGACGGCAGGCTGCTGGTGGATGGCGGCATGGTCGACAACATCCCGGTG
GACGTGGCGCGCGACATGGGCGTGGACGTGGTGATCGTGGTCGACATCGGCAACCCGCTGCGCGACCGCAAG
GACCTGAGCACCGTGCTCGACGTGATGAACCAGTCGATCACCCTGATGACCCGGAAGAACTCCGAAGCCCAG
CTGGCCACGCTCAAGCCCGGCGACGTGCTGATCCAGCCGCCGCTGTCCGGCTACGGCACCACCGACTTCGGC
CGCGTGCCGCAACTGATCGACGCCGGCTACCGCGCCACCACGGTGCTCGCCGCGCGCCTCGCCGAGTTGCGC
AAGCCGAAGGACCTCAACAGCGAAGCGCTCGACGTGGCGCGCACGCCGAACCAGCGCAAGCCGGTGATCGAC
GCGATCCGCGTGGAGAACAACTCGAAGGTCAGCGACGAGGTGATCCGCCACTACATCCGCCAGCCGCTCGGC
ACGCGCCTCGACCTCGGCCGCCTGCAGGACGACATGAGCACCCTCTACGGCCTCGACTACTTCGACCAGGTG
CAGTACCGGGTGGTCAAGGAGAAGAAGCTCAACACCCTGGTGATCCACGCCACCGGCAAGAAAGGCGGCACC
GACTTCCTTCGCCTGGGCCTCAACCTGTCCGACGACATGCGCGGCGAAAGCACCTTCAACCTCGGCGGCAGC
TACCGCATGAACGGCCTCAACCGGCTCGGCGCCGAGTGGCTGACCCGGGTCCAGCTCGGCGACCGCCAGGAA
CTCTACAGCGAGTTCTACCAGCCGCTCGACGTCGGCTCACGCTACTTCGTCGCGCCCTTCCTGTTCCACGAG
GCACAGAACGTCGACGTCACCGAGAACAACGACCCGCTGCTGCGCTATCGCCTGGAGCGCTACGGCTACGGC
CTCAACGTCGGCCGGCAGATCGCCAACAACGGCGAAATCCGCCTGGGCGCGGTGCAGGCCTACGGCAAGGCC
GACGTACGCATCGGCGACCCGAGCCTGCCGGACATCGACTTCACCGAGGGCTACTACGAACTGAAGTACTCG
TTCGACACCGTCGACGACGTCAATTTCCCCCACGAGGGCGAGGAGATCGGCCTGACCATGCGCCGCTACGAC
AAGTCCCTCGGCTCGGACGACAGCTACCGGCAGTGGGACCTGCGGCTGAACAAGGCGCTCAGCTTCGGCGCC
GACACCTGGGTGTTCGGCGGCGGCTACGGGCGCACCCTGGACGACGCCGAGGTGGTCACCTCCAGCTTCACC
CTCGGCGGCGCCCGCGAGCTGTCGGGCTTCCGCCGCGATGCGCTGTCCGGGCAGAACTACAGCCTGGGGCGG
ATCGTCTATTACCGGCGCCTCACCGAACGTTCCTTCCTGCCGCTGGACTTCCCGCTGTACCTGGGCGGCAGC
ATCGAGCGCGGACGCATCTGGAACAACGACAACGAATACGACAGCGGCTACATCAACGCCGCCAGCCTGATG
ATCGGCTTCGATACGCCGCTGGGGCCGCTGACCTTCAGCTACGGGATCAACGACGAGAACTTCAAGGCGTTC
TACCTGAACCTCGGGCAGAACTTCTGA
Translation:
MRRLLLVLLLLLPLSALATEARPKIGLVLSGGAARGLAHIGVLKALDEQGIQIDAIAGTSMGAVVGGLYASG
YTPAELERIALEMDWQQALSDAPPRKDVPFRRKQDDRDFLVKQKISFRDDGTLGLPLGVIQGQNLAMVLESL
LVHTSDNRDFDKLAIPFRAVSTDIATGEKVVFRKGHLPQAIRASMSIPAVFAPVEIDGRLLVDGGMVDNIPV
DVARDMGVDVVIVVDIGNPLRDRKDLSTVLDVMNQSITLMTRKNSEAQLATLKPGDVLIQPPLSGYGTTDFG
RVPQLIDAGYRATTVLAARLAELRKPKDLNSEALDVARTPNQRKPVIDAIRVENNSKVSDEVIRHYIRQPLG
TRLDLGRLQDDMSTLYGLDYFDQVQYRVVKEKKLNTLVIHATGKKGGTDFLRLGLNLSDDMRGESTFNLGGS
YRMNGLNRLGAEWLTRVQLGDRQELYSEFYQPLDVGSRYFVAPFLFHEAQNVDVTENNDPLLRYRLERYGYG
LNVGRQIANNGEIRLGAVQAYGKADVRIGDPSLPDIDFTEGYYELKYSFDTVDDVNFPHEGEEIGLTMRRYD
KSLGSDDSYRQWDLRLNKALSFGADTWVFGGGYGRTLDDAEVVTSSFTLGGARELSGFRRDALSGQNYSLGR
IVYYRRLTERSFLPLDFPLYLGGSIERGRIWNNDNEYDSGYINAASLMIGFDTPLGPLTFSYGINDENFKAF
YLNLGQNF*
AnnotationID:273GeneID:263
AnnotatorUID: diggins
Modification Date/Time: 2005-08-28 10:10:12
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3339
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0729,COG1752
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]
CD-Length = 594 residues, 100.0% aligned
Score =  362 bits (931), Expect = 6e-101
Identities = 120/599 (20%), Positives = 189/599 (31%), Gaps = 26/599 (4%)

COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily
CD-Length = 306 residues,  94.4% aligned
Score =  224 bits (572), Expect = 3e-59
Identities = 120/312 (38%), Positives = 158/312 (50%), Gaps = 39/312 (12%)







   
Genomic Context:






   
Comment:


















    ReferenceID:529




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17671




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32226




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:263_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:263
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
440
                           PA3339_tr
                           translation of PA3339
                           728
                           99.72
                           99.86
                           0
                           3728.0
     

     
     
23711
                           gb|AAG06727.1|AE004756_5
                           (AE004756) hypothetical protein PA3339 [Pseudomonas aeruginosa PAO1]
                           728
                           99.72
                           99.86
                           0
                           3728.0
     

     
     
23712
                           gb|AAN70088.1|AE016648_6
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           754
                           70.55
                           83.02
                           29
                           2771.0
     

     






      

          
GC ORFID: 43265How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3339Glimmer Score: 

          
Start: 3154225Stop: 3156411

          
Length: 2187


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3339 translation of PA3339Homolog Bit Score 1440.0

          
Other Homologs:  t_PA3339 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCCTGCTGCTCGTACTGCTGCTCCTGCTTCCCCTGTCCGCCCTCGCCACGGAGGCCCGGCCGAAG 
ATCGGCCTGGTCCTCTCCGGAGGTGCCGCCCGTGGCCTGGCCCATATCGGCGTGCTCAAGGCCCTCGACGAA 
CAGGGCATCCAGATCGACGCCATCGCCGGCACCAGCATGGGCGCGGTGGTCGGCGGCCTGTACGCCTCCGGC 
TACACCCCCGCCGAACTGGAGCGCATCGCCCTGGAGATGGACTGGCAGCAGGCGCTGTCCGACGCGCCGCCG 
CGCAAGGACGTGCCGTTCCGGCGCAAGCAGGACGACCGCGACTTCCTGGTCAAGCAGAAGATCAGCTTCCGC 
GACGACGGCACCCTCGGCCTGCCGCTGGGGGTGATCCAGGGCCAGAACCTGGCGATGGTGCTGGAAAGCCTG 
CTGGTGCACACCAGCGACAACCGCGACTTCGACAAGCTGGCGATCCCCTTCCGCGCCGTCTCCACCGATATC 
GCAACCGGCGAGAAAGTGGTGTTCCGCAAGGGCCACCTGCCCCAGGCGATCCGCGCCAGCATGTCGATCCCC 
GCCGTGTTCGCCCCGGTGGAGATCGACGGCAGGCTGCTGGTGGATGGCGGCATGGTCGACAACATCCCGGTG 
GACGTGGCGCGCGACATGGGCGTGGACGTGGTGATCGTGGTCGACATCGGCAACCCGCTGCGCGACCGCAAG 
GACCTGAGCACCGTGCTCGACGTGATGAACCAGTCGATCACCCTGATGACCCGGAAGAACTCCGAAGCCCAG 
CTGGCCACGCTCAAGCCCGGCGACGTGCTGATCCAGCCGCCGCTGTCCGGCTACGGCACCACCGACTTCGGC 
CGCGTGCCGCAACTGATCGACGCCGGCTACCGCGCCACCACGGTGCTCGCCGCGCGCCTCGCCGAGTTGCGC 
AAGCCGAAGGACCTCAACAGCGAAGCGCTCGACGTGGCGCGCACGCCGAACCAGCGCAAGCCGGTGATCGAC 
GCGATCCGCGTGGAGAACAACTCGAAGGTCAGCGACGAGGTGATCCGCCACTACATCCGCCAGCCGCTCGGC 
ACGCGCCTCGACCTCGGCCGCCTGCAGGACGACATGAGCACCCTCTACGGCCTCGACTACTTCGACCAGGTG 
CAGTACCGGGTGGTCAAGGAGAAGAAGCTCAACACCCTGGTGATCCACGCCACCGGCAAGAAAGGCGGCACC 
GACTTCCTTCGCCTGGGCCTCAACCTGTCCGACGACATGCGCGGCGAAAGCACCTTCAACCTCGGCGGCAGC 
TACCGCATGAACGGCCTCAACCGGCTCGGCGCCGAGTGGCTGACCCGGGTCCAGCTCGGCGACCGCCAGGAA 
CTCTACAGCGAGTTCTACCAGCCGCTCGACGTCGGCTCACGCTACTTCGTCGCGCCCTTCCTGTTCCACGAG 
GCACAGAACGTCGACGTCACCGAGAACAACGACCCGCTGCTGCGCTATCGCCTGGAGCGCTACGGCTACGGC 
CTCAACGTCGGCCGGCAGATCGCCAACAACGGCGAAATCCGCCTGGGCGCGGTGCAGGCCTACGGCAAGGCC 
GACGTACGCATCGGCGACCCGAGCCTGCCGGACATCGACTTCACCGAGGGCTACTACGAACTGAAGTACTCG 
TTCGACACCGTCGACGACGTCAATTTCCCCCACGAGGGCGAGGAGATCGGCCTGACCATGCGCCGCTACGAC 
AAGTCCCTCGGCTCGGACGACAGCTACCGGCAGTGGGACCTGCGGCTGAACAAGGCGCTCAGCTTCGGCGCC 
GACACCTGGGTGTTCGGCGGCGGCTACGGGCGCACCCTGGACGACGCCGAGGTGGTCACCTCCAGCTTCACC 
CTCGGCGGCGCCCGCGAGCTGTCGGGCTTCCGCCGCGATGCGCTGTCCGGGCAGAACTACAGCCTGGGGCGG 
ATCGTCTATTACCGGCGCCTCACCGAACGTTCCTTCCTGCCGCTGGACTTCCCGCTGTACCTGGGCGGCAGC 
ATCGAGCGCGGACGCATCTGGAACAACGACAACGAATACGACAGCGGCTACATCAACGCCGCCAGCCTGATG 
ATCGGCTTCGATACGCCGCTGGGGCCGCTGACCTTCAGCTACGGGATCAACGACGAGAACTTCAAGGCGTTC 
TACCTGAACCTCGGGCAGAACTTCTGA