ViewGene

Locus Name:
GeneID:
Location:

GeneID:2629
TrivialName: PA14_65970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65970
PAO1 Ortholog Locus:PA4989
Sequence Length:885
Protein Length:294
Start: 5877415
Stop: 5876531
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08374.1|AE004911_9 (AE004911) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 293/294 (99%), Positives = 294/294 (100%)
Sequence:
ATGCAGTGGAATCTGGAGCAGATCCGCCTGTTCGTCAGCGTCGCCGAGCGCCAGTCGTTCTCTGCCGCCGCC
CGCGAACTGAAGCGGGTGCAATCGGCGGTGAGCAACGGCATCGCGCTGCTGGAGGCGGACCTCGGCGTCACC
CTGTTCGAACGCAGCAGCGGACGCCAGCCGCGCCTGACCGACGAGGGCCGGGTGCTGCTGGCGGAGGCGCGC
GAGGTGCTGCGCCAGTGCGAGCGCCTGCAGGGGCGCGCGCTGGGCCTGGCGCGCGGCGAGGAGCCGCGGCTG
CGCCTGGCCCAGGACGAGGCGATGCCCTACCAGCCGGTGCTGGACAGCCTGGAAGCGCTGGCGCAGCGCTTT
CCCAGTCTGGAGGTGCAGGTGTCCAGCGGCGGCCAGGGCGACGTGACCCGTCGTTTGCTCGAGGAGCAGGCT
GACCTCGGCCTGCTGTTCCACCATGAGCGCATGCCTGAGTCGCTGGAGCGGCGGCGCCTCGGCAGCGTCGAG
ATGGTCACGGTGTGCGGCGCCGGCCACCCGCTGGCCGGGCTGCAACGGGTCAGTCGCCGCGAGCTGGCACAG
CACCGGCAACTTTTGATCGTGCCCCAGCAGAGCGGCTATCCGGGCGGCGAGCAGATCAGCCCGCAGGTGTGG
CGGCTGGACAGCTTCTATTCCATGGCCGAGTTGCTGATGCGCAACCTCGGCTGGGCCTGGCTGCCGCGGCAC
GTGGTGCAGTACCCCACCTACGACCGGCTGATGGTGGAGCTGACCAGCGACTGGACGCCGCCGTCGCTGGTG
GTCGAACTGGTCTGGCGGCGCAACGAGGTGCTCGGCCCGGCGGCGGCCTGGCTCGGCGAAACCTTCACCCGC
CACCTGCGCGCCATCGGCTGA
Translation:
MQWNLEQIRLFVSVAERQSFSAAARELKRVQSAVSNGIALLEADLGVTLFERSSGRQPRLTDEGRVLLAEAR
EVLRQCERLQGRALGLARGEEPRLRLAQDEAMPYQPVLDSLEALAQRFPSLEVQVSSGGQGDVTRRLLEEQA
DLGLLFHHERMPESLERRRLGSVEMVTVCGAGHPLAGLQRVSRRELAQHRQLLIVPQQSGYPGGEQISPQVW
RLDSFYSMAELLMRNLGWAWLPRHVVQYPTYDRLMVELTSDWTPPSLVVELVWRRNEVLGPAAAWLGETFTR
HLRAIG*
AnnotationID:2637GeneID:2629
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4989
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70496.1|AE016691_4 (AE016792) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 301

 Score =  437 bits (1124), Expect = e-122
 Identities = 215/293 (73%), Positives = 243/293 (82%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.3% aligned
Score =  124 bits (311), Expect = 1e-29
Identities = 91/295 (30%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 91.6 bits (227), Expect = 1e-19
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 8/210 (3%)
Genomic Context:
Comment:
ReferenceID:5261
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22406
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35065
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2629_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2629

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4345 PA4989_tr translation of PA4989 294 99.65 99.99 0 1499.0
127231 gb|AAG08374.1|AE004911_9 (AE004911) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 294 99.65 99.99 0 1499.0
127232 gb|AAN70496.1|AE016691_4 (AE016792) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 301 71.42 80.73 7 1122.0
127233 gb|AAK64849.1| (AE007212) putative LysR-type regulator [Sinorhizobium meliloti] 337 20.17 29.37 179 250.0
GC ORFID: 45631How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4989Glimmer Score:
Start: 5141098Stop: 5140214
Length: 885
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4989 translation of PA4989Homolog Bit Score 582.0
Other Homologs: t_PA4989 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTGGAATCTGGAGCAGATCCGCCTGTTCGTCAGCGTCGCCGAGCGCCAGTCGTTCTCTGCCGCCGCC
CGCGAACTGAAGCGGGTGCAATCGGCGGTGAGCAACGGCATCGCGCTGCTGGAGGCGGACCTCGGCGTCACC
CTGTTCGAACGCAGCAGCGGACGCCAGCCGCGCCTGACCGACGAGGGCCGGGTGCTGCTGGCGGAGGCGCGC
GAGGTGCTGCGCCAGTGCGAGCGCCTGCAGGGGCGCGCGCTGGGCCTGGCGCGCGGCGAGGAGCCGCGGCTG
CGCCTGGCCCAGGACGAGGCGATGCCCTACCAGCCGGTGCTGGACAGCCTGGAAGCGCTGGCGCAGCGCTTT
CCCAGTCTGGAGGTGCAGGTGTCCAGCGGCGGCCAGGGCGACGTGACCCGTCGTTTGCTCGAGGAGCAGGCT
GACCTCGGCCTGCTGTTCCACCATGAGCGCATGCCTGAGTCGCTGGAGCGGCGGCGCCTCGGCAGCGTCGAG
ATGGTCACGGTGTGCGGCGCCGGCCACCCGCTGGCCGGGCTGCAACGGGTCAGTCGCCGCGAGCTGGCACAG
CACCGGCAACTTTTGATCGTGCCCCAGCAGAGCGGCTATCCGGGCGGCGAGCAGATCAGCCCGCAGGTGTGG
CGGCTGGACAGCTTCTATTCCATGGCCGAGTTGCTGATGCGCAACCTCGGCTGGGCCTGGCTGCCGCGGCAC
GTGGTGCAGTACCCCACCTACGACCGGCTGATGGTGGAGCTGACCAGCGACTGGACGCCGCCGTCGCTGGTG
GTCGAACTGGTCTGGCGGCGCAACGAGGTGCTCGGCCCGGCGGCGGCCTGGCTCGGCGAAACCTTCACCCGC
CACCTGCGCGCCATCGGCTGA