ViewGene

Locus Name:
GeneID:
Location:

GeneID:2626
TrivialName: PA14_51160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51160
PAO1 Ortholog Locus:PA1018
Sequence Length:867
Protein Length:288
Start: 4546870
Stop: 4546004
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04407.1|AE004534_5 (AE004534) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 284/288 (98%), Positives = 286/288 (99%)
Sequence:
ATGGCGCTCGATCCTGAGGTGCTCCTGAACTACCCGATCCCCGAAGTACGCCAGCGCTACAGCCGGCGCGAC
AGCGCCTTCTATGCATTGACCCTCGGTCTGGGCGGCGACCCGCTGGACGAGCGCCAACTGGTCTACGTCGAT
CCGTGCCGCGATCTCCAGGCATTGCCGTGCATGGCCCTGGTGCTCGGTCATCCGGGCTTCTGGCTGGGCAAT
CCGGCGACTGGCGTGGACGCGCTGCGCCTGGTTCACGGCGAGCAGCGCCTGGAGTGGCGGCGGCCGTTGCCG
GCGGAAGGCGAGGTGATCGGTCGGACCCGGGTCACCGGTCTGGTAGACAAGGGCGCCGACAAGGGCGCGCTG
CTCTACAGCGAGAAGGTGCTCAGCGATGCGCTCAGCGGCGAGGTGCTGGCTGTCGCCCGCAGCACCACCTTC
CTTCGCGGCGACGGCGGCTTCGGTGGTTCCCGGCAGGTGCCGGAAACGCCGCATCGCTTGCCTGAACGGTCA
CCCGACCTGCGACTCGACCTGCCGACCCGTCCGGAGCAGGCCCTGTACTACCGCCTCAACGGCGACGACAAC
CCGCTCCACGCGGAGCCCGCGGCAGCGCTGCGGGCCGGCTTCCCGCGGCCGATCCTGCATGGCCTGTGCACC
CTCGGCGTGGCATTCCACGCGGTGTTGCGCGGGCTCGCCGACTACCGCGCGGAGCAACTGGGACATCTGCAG
GTGCGTTTCTCGGCTCCGGTGTTTCCCGGCGAGACCTTGCGTACCGAGATGTGGAGCGACGGCTCGTTCCGC
ACTCGCGTCGTCGAGCGCGATGTGGTGGTGCTGGACAACGGCCGGGTAGGTCCGCCGCCAGAGCGGCCGGAC
TGA
Translation:
MALDPEVLLNYPIPEVRQRYSRRDSAFYALTLGLGGDPLDERQLVYVDPCRDLQALPCMALVLGHPGFWLGN
PATGVDALRLVHGEQRLEWRRPLPAEGEVIGRTRVTGLVDKGADKGALLYSEKVLSDALSGEVLAVARSTTF
LRGDGGFGGSRQVPETPHRLPERSPDLRLDLPTRPEQALYYRLNGDDNPLHAEPAAALRAGFPRPILHGLCT
LGVAFHAVLRGLADYRAEQLGHLQVRFSAPVFPGETLRTEMWSDGSFRTRVVERDVVVLDNGRVGPPPERPD
*
AnnotationID:2634GeneID:2626
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1018
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01575, COG2030
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam01575, MaoC_dehydratas, MaoC like domain. Score: 98.5, 8e-22
COG2030, MaoC, Acyl dehydratase [Lipid metabolism]. Score: 87.9, 1e-18
Genomic Context:
Comment:
ReferenceID:5255
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17005
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1018_CDS.cgi
URL:
ReferenceID:22400
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2626

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4341 PA1018_tr translation of PA1018 288 98.61 99.30 0 1501.0
127121 gb|AAG04407.1|AE004534_5 (AE004534) hypothetical protein PA1018 [Pseudomonas aeruginosa PAO1] 288 98.61 99.30 0 1501.0
127122 dbj|BAA92741.1| (AB040026) (R)-specific enoyl-CoA hydratase [Pseudomonas aeruginosa] 288 98.61 99.30 0 1501.0
127123 emb|CAA10044.1| (AJ012480) hypothetical protein [Pseudomonas mendocina] 288 55.20 61.11 90 856.0
127124 emb|CAE26857.1| (BX572597) MaoC-like dehydratase [Rhodopseudomonas palustris CGA009] 292 52.39 66.78 10 766.0
GC ORFID: 45628How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1018Glimmer Score:
Start: 407038Stop: 407904
Length: 867
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1018 translation of PA1018Homolog Bit Score 582.0
Other Homologs: t_PA1018 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGCTCGATCCTGAGGTGCTCCTGAACTACCCGATCCCCGAAGTACGCCAGCGCTACAGCCGGCGCGAC
AGCGCCTTCTATGCATTGACCCTCGGTCTGGGCGGCGACCCGCTGGACGAGCGCCAACTGGTCTACGTCGAT
CCGTGCCGCGATCTCCAGGCATTGCCGTGCATGGCCCTGGTGCTCGGTCATCCGGGCTTCTGGCTGGGCAAT
CCGGCGACTGGCGTGGACGCGCTGCGCCTGGTTCACGGCGAGCAGCGCCTGGAGTGGCGGCGGCCGTTGCCG
GCGGAAGGCGAGGTGATCGGTCGGACCCGGGTCACCGGTCTGGTAGACAAGGGCGCCGACAAGGGCGCGCTG
CTCTACAGCGAGAAGGTGCTCAGCGATGCGCTCAGCGGCGAGGTGCTGGCTGTCGCCCGCAGCACCACCTTC
CTTCGCGGCGACGGCGGCTTCGGTGGTTCCCGGCAGGTGCCGGAAACGCCGCATCGCTTGCCTGAACGGTCA
CCCGACCTGCGACTCGACCTGCCGACCCGTCCGGAGCAGGCCCTGTACTACCGCCTCAACGGCGACGACAAC
CCGCTCCACGCGGAGCCCGCGGCAGCGCTGCGGGCCGGCTTCCCGCGGCCGATCCTGCATGGCCTGTGCACC
CTCGGCGTGGCATTCCACGCGGTGTTGCGCGGGCTCGCCGACTACCGCGCGGAGCAACTGGGACATCTGCAG
GTGCGTTTCTCGGCTCCGGTGTTTCCCGGCGAGACCTTGCGTACCGAGATGTGGAGCGACGGCTCGTTCCGC
ACTCGCGTCGTCGAGCGCGATGTGGTGGTGCTGGACAACGGCCGGGTAGGTCCGCCGCCAGAGCGGCCGGAC
TGA