ViewGene
Locus Name:
GeneID:
Location:

GeneID:2624
TrivialName: PA14_64870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64870
PAO1 Ortholog Locus:PA4910
Sequence Length:873
Protein Length:290
Start: 5780922
Stop: 5780050
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08295.1|AE004904_3 (AE004904) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 290/290 (100%), Positives = 290/290 (100%)
Sequence:
ATGAGCGACAAGATCCTCAGCGTCGAGCACCTGATGATGCACTTCGGCGGCATCAAGGCGCTCAACGACGTC
AACCTCGACGTCGAGCGCGGTTCGATCACCGCGCTGATCGGCCCCAACGGCGCCGGCAAGACCACCGTGTTC
AACTGCCTCACCGGCTTCTACAAGGCCACCGGCGGCAACATCCTGCTCAACACCCAGGGGCGCACCACGGAC
GTCATCCAGGTGCTCGGCGAGCCGTTCCAGCTGGACGACTTCGTCAAGCCGCCGCAACTGGGCAGTCGCCTC
TACTACAAGATGTTCGGCGGCACCCACCTGGTGAACCGCGCCGGGCTGGCGCGGACGTTCCAGAACATCCGC
CTGTTCAAGGACATGTCGGTGGTGGAGAACCTGCTGGTGGCGCAGCACATGTTCGTCAACCGCAACCTGCTC
GCCGGCATCCTCAACACTCCCGGCTATCGCCGCGCCGAGAGCGAGGCGCTGGACCACGCGTTCTACTGGCTG
GAGGTGGTCGACCTGGTGGACTGCGCCAACCGCCTGGCCGGCGAGATGTCCTACGGCCAGCAACGGCGCCTG
GAGATCGCCCGGGCCATGTGCACGCGGCCGGAACTCATCTGCCTGGACGAACCGGCCGCCGGCCTCAACCCG
GCCGAGACCCACGCCCTGAGCAACATCGTCCGCTACCTGCGCGACCACCACGGGATCACCGTACTGCTGATC
GAGCATGACATGGGCATGGTGATGAACATCTCCGACCACATCATCGTGCTCGACCACGGCGACGTGATCGCC
CGTGGCAACCCCGAACAGATCCGCCATGACGAGAAGGTGATCGCCGCCTATCTCGGTGCCGACGAAGAGGAG
CTGTCATGA
Translation:
MSDKILSVEHLMMHFGGIKALNDVNLDVERGSITALIGPNGAGKTTVFNCLTGFYKATGGNILLNTQGRTTD
VIQVLGEPFQLDDFVKPPQLGSRLYYKMFGGTHLVNRAGLARTFQNIRLFKDMSVVENLLVAQHMFVNRNLL
AGILNTPGYRRAESEALDHAFYWLEVVDLVDCANRLAGEMSYGQQRRLEIARAMCTRPELICLDEPAAGLNP
AETHALSNIVRYLRDHHGITVLLIEHDMGMVMNISDHIIVLDHGDVIARGNPEQIRHDEKVIAAYLGADEEE
LS*
AnnotationID:2632GeneID:2624
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:00
Gene Name:
Confidence Code:3
GeneProduct:putative branched-chain amino acid ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:braF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0411,COG4674
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58344.1| (AE016873) high affinity branched-chain amino acid ABC transporter,
           ATP-binding protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 291

 Score =  466 bits (1199), Expect = e-131
 Identities = 229/288 (79%), Positives = 260/288 (90%)

>gb|AAN70433.1|AE016684_12 (AE016792) branched-chain amino acid ABC transporter, ATP-binding
           protein [Pseudomonas putida KT2440]
          Length = 291

 Score =  462 bits (1188), Expect = e-129
 Identities = 228/287 (79%), Positives = 255/287 (88%)

>gb|AAL51442.1| (AE009468) HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT
           ATP-BINDING PROTEIN BRAF [Brucella melitensis 16M]
          Length = 446

 Score =  288 bits (736), Expect = 3e-77
 Identities = 149/293 (50%), Positives = 205/293 (69%), Gaps = 27/293 (9%)








 
Structural Features:
COG0411, LivG, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 250 residues, 100.0% aligned
Score =  328 bits (843), Expect = 4e-91
Identities = 132/283 (46%), Positives = 178/283 (62%), Gaps = 33/283 (11%)

COG4674, Uncharacterized_ABC-type_transport_system, Uncharacterized 
ABC-type transport system, ATPase component
CD-Length = 249 residues, 100.0% aligned
Score =  178 bits (452), Expect = 8e-46
Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 38/287 (13%)






   
Genomic Context:






   
Comment:
other possible gene name: livG


















    ReferenceID:5251




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22396




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35152




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2624_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2624
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4338
                           PA4910_tr
                           translation of PA4910
                           290
                           99.99
                           99.99
                           0
                           1504.0
     

     
     
127007
                           gb|AAG08295.1|AE004904_3
                           (AE004904) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           290
                           99.99
                           99.99
                           0
                           1504.0
     

     
     
127008
                           gb|AAO58344.1|
                           (AE016873) high affinity branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           291
                           79.38
                           90.03
                           1
                           1197.0
     

     
     
127009
                           gb|AAN70433.1|AE016684_12
                           (AE016792) branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           291
                           79.03
                           88.31
                           1
                           1187.0
     

     
     
127010
                           gb|AAN66763.1|AE016304_8
                           (AE016778) branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           290
                           52.41
                           65.86
                           35
                           759.0
     

     






      

          
GC ORFID: 45626How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4910Glimmer Score: 

          
Start: 5044603Stop: 5043731

          
Length: 873


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4910 translation of PA4910Homolog Bit Score 583.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7645 (ORF: BLASTX 467.0), t_PA1071 (ORF: BLASTX 285.0), psyr_15may02_Scaffold5_revised_gene6076 (ORF: BLASTX 282.0), t_PA4910 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACAAGATCCTCAGCGTCGAGCACCTGATGATGCACTTCGGCGGCATCAAGGCGCTCAACGACGTC 
AACCTCGACGTCGAGCGCGGTTCGATCACCGCGCTGATCGGCCCCAACGGCGCCGGCAAGACCACCGTGTTC 
AACTGCCTCACCGGCTTCTACAAGGCCACCGGCGGCAACATCCTGCTCAACACCCAGGGGCGCACCACGGAC 
GTCATCCAGGTGCTCGGCGAGCCGTTCCAGCTGGACGACTTCGTCAAGCCGCCGCAACTGGGCAGTCGCCTC 
TACTACAAGATGTTCGGCGGCACCCACCTGGTGAACCGCGCCGGGCTGGCGCGGACGTTCCAGAACATCCGC 
CTGTTCAAGGACATGTCGGTGGTGGAGAACCTGCTGGTGGCGCAGCACATGTTCGTCAACCGCAACCTGCTC 
GCCGGCATCCTCAACACTCCCGGCTATCGCCGCGCCGAGAGCGAGGCGCTGGACCACGCGTTCTACTGGCTG 
GAGGTGGTCGACCTGGTGGACTGCGCCAACCGCCTGGCCGGCGAGATGTCCTACGGCCAGCAACGGCGCCTG 
GAGATCGCCCGGGCCATGTGCACGCGGCCGGAACTCATCTGCCTGGACGAACCGGCCGCCGGCCTCAACCCG 
GCCGAGACCCACGCCCTGAGCAACATCGTCCGCTACCTGCGCGACCACCACGGGATCACCGTACTGCTGATC 
GAGCATGACATGGGCATGGTGATGAACATCTCCGACCACATCATCGTGCTCGACCACGGCGACGTGATCGCC 
CGTGGCAACCCCGAACAGATCCGCCATGACGAGAAGGTGATCGCCGCCTATCTCGGTGCCGACGAAGAGGAG 
CTGTCATGA