ViewGene
Locus Name:
GeneID:
Location:

GeneID:2622
TrivialName: PA14_26880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26880
PAO1 Ortholog Locus:PA2877
Sequence Length:894
Protein Length:297
Start: 2338187
Stop: 2339080
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06265.1|AE004714_2 (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 294/297 (98%), Positives = 294/297 (98%)
Sequence:
ATGGATCGTCTGGACAGCATGCGCGTGTTCCTGCGCGTTGCCGAAACCGGCAGCTTCACCAAGGCCGCGGAC
CTGCTGGACATGCCGCGGGCGACGGTCTCGGCGGCGGTCCAGCAGCTCGAAGCGCAACTCGGCAGCCGGCTG
TTGCATCGCACCACCCGGCAGGTCCAGCTGACCCACGACGGTAGCGTGGTGCTGGAGCGTTGCCGTCACCTG
CTGGAAGACATGGAAGAGCTGGAGAGCCTGTTCCGCGACGGCAGCCGCGCCAGCGGCCGGCTCAAGGTCGAC
GTGCCGAGCCGGGTGGCGCGACTGCTGATCGCCCCGGCGCTGCCGGAATTCTTCCGCCAGCATCCGGACATC
GAACTGGAACTGGGCTCCAGCGACCGTTCGGTGGACCTGGTGCAGGAGGGCGTCGACTGCGTCCTGCGGGTC
GGCCAGTTGGGCAACAGCAGCCTGGTGGCGCGACGCCTCGGCGAGATGCAACTGATCAATTGCGCCAGTCCC
GCCTACCTGGAAGAGCATGGCGAGCCACGGACGCCGGCCGACCTCGACCGGCACTGGGCGGTCAACTATGCC
TCGCCCAGCAGCGGCCGGGTGTTGCCCTGGGAGTACCGCGAGGATGGGCGCACCCTGACCCGCGCGTTGCGC
AGCCGGGTCACGGTGAACAACGCGGAGAGCTACATCGCCTGCTGCCTGTCCGGGCTGGGCCTGATCCAGATC
CCTGCCTACGACGTGCGCGAGCACCTCCAACGCGGCGAGCTGTGCGAGGTGCTGCCGCATTGGCGGGCCGAA
GCGATGCCGGCGTACGCCCTGTATCCGCACCGGCGGCATCTGTCGCGGCGGGTCAGGGCATTCGTCGACTGG
CTGGAGCAACTGCTCCGCGCCCGCCTCTAG
Translation:
MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSVVLERCRHL
LEDMEELESLFRDGSRASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELELGSSDRSVDLVQEGVDCVLRV
GQLGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPADLDRHWAVNYASPSSGRVLPWEYREDGRTLTRALR
SRVTVNNAESYIACCLSGLGLIQIPAYDVREHLQRGELCEVLPHWRAEAMPAYALYPHRRHLSRRVRAFVDW
LEQLLRARL*
AnnotationID:2630GeneID:2622
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2877
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL45161.1| (AE009365) transcriptional regulator, LysR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 299

 Score =  370 bits (949), Expect = e-102
 Identities = 180/298 (60%), Positives = 235/298 (78%), Gaps = 1/298 (0%)

>emb|CAE32487.1| (BX640443) LysR family regulatory protein [Bordetella
           bronchiseptica]
          Length = 302

 Score =  353 bits (906), Expect = 7e-97
 Identities = 182/301 (60%), Positives = 224/301 (74%), Gaps = 5/301 (1%)

>emb|CAD18261.1| (AL646082) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 315

 Score =  312 bits (800), Expect = 1e-84
 Identities = 156/293 (53%), Positives = 207/293 (70%), Gaps = 1/293 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.0% aligned
Score =  142 bits (358), Expect = 5e-35
Identities = 101/302 (33%), Positives = 149/302 (49%), Gaps = 13/302 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5247




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22392




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36195




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2622_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2622
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4334
                           PA2877_tr
                           translation of PA2877
                           297
                           98.98
                           98.98
                           0
                           1502.0
     

     
     
126952
                           gb|AAG06265.1|AE004714_2
                           (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           297
                           98.98
                           98.98
                           0
                           1502.0
     

     
     
126953
                           gb|AAL45161.1|
                           (AE009365) transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           299
                           60.20
                           78.59
                           2
                           951.0
     

     
     
126957
                           emb|CAE43800.1|
                           (BX640421) LysR family regulatory protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           303
                           60.06
                           73.59
                           7
                           909.0
     

     
     
126956
                           emb|CAE37839.1|
                           (BX640430) LysR family regulatory protein [Bordetella parapertussis]
                           303
                           60.06
                           73.92
                           7
                           910.0
     

     






      

          
GC ORFID: 45624How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2877Glimmer Score: 

          
Start: 2615739Stop: 2614846

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2877 translation of PA2877Homolog Bit Score 583.0

          
Other Homologs:  t_PA2534 (ORF: BLASTX 308.0), psyr_15may02_Scaffold9_revised_gene8132 (ORF: BLASTX 273.0), t_PA4174 (ORF: BLASTX 254.0), t_PA2877 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCGTCTGGACAGCATGCGCGTGTTCCTGCGCGTTGCCGAAACCGGCAGCTTCACCAAGGCCGCGGAC 
CTGCTGGACATGCCGCGGGCGACGGTCTCGGCGGCGGTCCAGCAGCTCGAAGCGCAACTCGGCAGCCGGCTG 
TTGCATCGCACCACCCGGCAGGTCCAGCTGACCCACGACGGTAGCGTGGTGCTGGAGCGTTGCCGTCACCTG 
CTGGAAGACATGGAAGAGCTGGAGAGCCTGTTCCGCGACGGCAGCCGCGCCAGCGGCCGGCTCAAGGTCGAC 
GTGCCGAGCCGGGTGGCGCGACTGCTGATCGCCCCGGCGCTGCCGGAATTCTTCCGCCAGCATCCGGACATC 
GAACTGGAACTGGGCTCCAGCGACCGTTCGGTGGACCTGGTGCAGGAGGGCGTCGACTGCGTCCTGCGGGTC 
GGCCAGTTGGGCAACAGCAGCCTGGTGGCGCGACGCCTCGGCGAGATGCAACTGATCAATTGCGCCAGTCCC 
GCCTACCTGGAAGAGCATGGCGAGCCACGGACGCCGGCCGACCTCGACCGGCACTGGGCGGTCAACTATGCC 
TCGCCCAGCAGCGGCCGGGTGTTGCCCTGGGAGTACCGCGAGGATGGGCGCACCCTGACCCGCGCGTTGCGC 
AGCCGGGTCACGGTGAACAACGCGGAGAGCTACATCGCCTGCTGCCTGTCCGGGCTGGGCCTGATCCAGATC 
CCTGCCTACGACGTGCGCGAGCACCTCCAACGCGGCGAGCTGTGCGAGGTGCTGCCGCATTGGCGGGCCGAA 
GCGATGCCGGCGTACGCCCTGTATCCGCACCGGCGGCATCTGTCGCGGCGGGTCAGGGCATTCGTCGACTGG 
CTGGAGCAACTGCTCCGCGCCCGCCTCTAG