ViewGene
Locus Name:
GeneID:
Location:

GeneID:2621
TrivialName: PA14_33430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33430
PAO1 Ortholog Locus:PA2418
Sequence Length:861
Protein Length:286
Start: 2942587
Stop: 2941727
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05806.1|AE004669_3 (AE004669) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 285/286 (99%), Positives = 285/286 (99%)
Sequence:
GTGAAAAAGGTCCTGGGAATCTACGGCAACGCCAACCGCCACTGGGTGGGCGACGGATTCCCCGTTCGTTCG
CTCTTTTCCTACAACACACTGGGCCAGCATATCAGCCCGTTCCTCTTGCTGGACTACGCCGGGCCTGCTGAT
TTCCCCCCCGCACAGCAGCGCCGCGGCGTAGGCCAGCATCCTCATCGCGGCTTCGAGACGGTGACCATCGTC
TACCAGGGCGAGGTCGAGCACCACGACTCCACCGGCGCCGGCGGACGCATCGGGCCGGGGGATGTGCAGCGG
ATGACGGCGGCCTCCGGGATCCTCCACGAGGAGTACCACTCGGAACGCTTCCGTAGCACAGGTGGAACGCTG
GAAATGGTCCAGCTATGGGTCAACCTGCCCTCCAGCGACAAGATGAATCCGCCGCGCTACCAGACCCTGCTG
GATGCCGACATTCCCCGCGTCGGCCTGCCCGACAGGGCCGGCGAACTGCGGGTGATCGCCGGACGCTACGGC
CGCCACCAGGGGCCGGCGCTGACCCACTCGCCACTGGCGGTCTGGGACGTGCAACTGAAGGCCGGCAAGCAC
CTCGCCCTCGACCTGCCCAAGGGACATACCTGCGCCGTGGTGGTCCTGCGCGGCACCCTCGCGGTCGGCGAC
GAGATCGTTCGCGAAGCCCAGGTCGCCCTGCTCGACCGCGACGACCCGCGGCTGGAACTGGAAGCCAACAAC
GACGTGCAGTTGCTGGTGCTCAGCGGCGAGCCGCTGGACGAGCCGATCATCGGCTATGGCCCCTTCGTGATG
AGCAGCCGCGAGGAAATCGACCAGGCCATCGAGGACTTCGAGAACGGGCGCTTCATCCGCGCCCACTGA
Translation:
MKKVLGIYGNANRHWVGDGFPVRSLFSYNTLGQHISPFLLLDYAGPADFPPAQQRRGVGQHPHRGFETVTIV
YQGEVEHHDSTGAGGRIGPGDVQRMTAASGILHEEYHSERFRSTGGTLEMVQLWVNLPSSDKMNPPRYQTLL
DADIPRVGLPDRAGELRVIAGRYGRHQGPALTHSPLAVWDVQLKAGKHLALDLPKGHTCAVVVLRGTLAVGD
EIVREAQVALLDRDDPRLELEANNDVQLLVLSGEPLDEPIIGYGPFVMSSREEIDQAIEDFENGRFIRAH*
AnnotationID:2629GeneID:2621
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 11:11:41
Gene Name:
Confidence Code:3
GeneProduct:putative pirin-related protein
Cell Localization:()
Synonyms:PA2418
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1741
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19886.1| (AE008740) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 286

 Score =  351 bits (901), Expect = 2e-96
 Identities = 171/283 (60%), Positives = 211/283 (74%), Gaps = 1/283 (0%)

>gb|AAO69595.1| (AE016840) putative pirin-related protein [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 286

 Score =  345 bits (886), Expect = 1e-94
 Identities = 167/283 (59%), Positives = 210/283 (74%), Gaps = 1/283 (0%)








 
Structural Features:
COG1741, COG1741, Pirin-related protein
CD-Length = 276 residues, 100.0% aligned
Score =  252 bits (644), Expect = 5e-68
Identities = 125/287 (43%), Positives = 152/287 (52%), Gaps = 15/287 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22390




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32958




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2621_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2621
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4332
                           PA2418_tr
                           translation of PA2418
                           286
                           99.65
                           99.65
                           0
                           1503.0
     

     
     
126939
                           gb|AAG05806.1|AE004669_3
                           (AE004669) hypothetical protein PA2418 [Pseudomonas aeruginosa PAO1]
                           286
                           99.30
                           99.65
                           0
                           1500.0
     

     
     
126940
                           emb|CAC90958.1|
                           (AJ414151) conserved hypothetical protein [Yersinia pestis CO92]
                           289
                           62.97
                           72.66
                           3
                           944.0
     

     
     
126941
                           emb|CAD86055.1|
                           (BX321863) DUF209 [Nitrosomonas europaea ATCC 19718]
                           288
                           62.50
                           74.65
                           2
                           940.0
     

     
     
126942
                           emb|CAE31777.1|
                           (BX640440) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           288
                           61.45
                           77.43
                           2
                           936.0
     

     






      

          
GC ORFID: 45623How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2418Glimmer Score: 

          
Start: 2011329Stop: 2012189

          
Length: 861


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2418 translation of PA2418Homolog Bit Score 583.0

          
Other Homologs:  t_PA3240 (ORF: BLASTX 162.0), t_PA2418 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAAAAGGTCCTGGGAATCTACGGCAACGCCAACCGCCACTGGGTGGGCGACGGATTCCCCGTTCGTTCG 
CTCTTTTCCTACAACACACTGGGCCAGCATATCAGCCCGTTCCTCTTGCTGGACTACGCCGGGCCTGCTGAT 
TTCCCCCCCGCACAGCAGCGCCGCGGCGTAGGCCAGCATCCTCATCGCGGCTTCGAGACGGTGACCATCGTC 
TACCAGGGCGAGGTCGAGCACCACGACTCCACCGGCGCCGGCGGACGCATCGGGCCGGGGGATGTGCAGCGG 
ATGACGGCGGCCTCCGGGATCCTCCACGAGGAGTACCACTCGGAACGCTTCCGTAGCACAGGTGGAACGCTG 
GAAATGGTCCAGCTATGGGTCAACCTGCCCTCCAGCGACAAGATGAATCCGCCGCGCTACCAGACCCTGCTG 
GATGCCGACATTCCCCGCGTCGGCCTGCCCGACAGGGCCGGCGAACTGCGGGTGATCGCCGGACGCTACGGC 
CGCCACCAGGGGCCGGCGCTGACCCACTCGCCACTGGCGGTCTGGGACGTGCAACTGAAGGCCGGCAAGCAC 
CTCGCCCTCGACCTGCCCAAGGGACATACCTGCGCCGTGGTGGTCCTGCGCGGCACCCTCGCGGTCGGCGAC 
GAGATCGTTCGCGAAGCCCAGGTCGCCCTGCTCGACCGCGACGACCCGCGGCTGGAACTGGAAGCCAACAAC 
GACGTGCAGTTGCTGGTGCTCAGCGGCGAGCCGCTGGACGAGCCGATCATCGGCTATGGCCCCTTCGTGATG 
AGCAGCCGCGAGGAAATCGACCAGGCCATCGAGGACTTCGAGAACGGGCGCTTCATCCGCGCCCACTGA