ViewGene

Locus Name:
GeneID:
Location:

GeneID: 262

TrivialName: PA14_10700

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10700

PAO1 Ortholog Locus: PA4117

Sequence Length: 2187

Protein Length: 728

Start: 923232

Stop: 921046

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07504.1|AE004828_5 (AE004828) probable bacteriophytochrome [Pseudomonas aeruginosa PAO1] Identities = 724/728 (99%), Positives = 726/728 (99%)

Sequence:

ATGACGAGCATCACCCCGGTTACCCTGGCGAACTGCGAGGACGAACCCATCCACGTGCCTGGCGCGATCCAG
CCGCACGGGGCGCTGATCGCCCTGCGCGCGGACGGCATGGTCCTCGCGGCAAGCGAGAACATCCAGGCGCTA
CTGGGTTTCGTCGCCTCGCCGGGTTCCTACCTGACGCCGGAGCAGGTGGGGCCGGAGGTCCTGCGCATGCTC
GAAGAGGGACTGACCGGCAACGGCCCATGGTCGAACAGCGTCGAGACGCGGATCGGCGAACACCTGTTCGAC
GTGATCGGCCACAGCTACAAGGAAGTGTTCTACCTGGAGTTCGAGATCCGCACCGCGGACACGCTGTCGATC
ACCTCCTTCACCCTCAACGCCCAGCGCATCATCGCCCAGGTCCAGTTGCACAACGACACCGCCAGCCTGCTC
AGCAACGTCACCGACGAACTGCGCCGGATGACCGGCTACGACCGGGTGATGGCCTACCGTTTCCGTCATGAC
GACTCCGGCGAGGTGGTCGCCGAGAGCCGTCGCGAAGACCTCGAAAGCTACCTGGGGCAACGCTACCCGGCC
TCGGACATCCCGGCCCAGGCGCGTCGCCTGTACATCCAGAACCCGATCAGGCTGATCGCCGACGTGGCCTAT
ACGCCGATGCGCGTGTTTCCCGCGCTGAACCCGGAGACCAACGAATCGTTCGATCTCAGCTACAGCGTGCTG
CGCAGCGTTTCGCCGATCCACTGCGAATACCTGACCAACATGGGCGTGCGCGCCTCGATGAGCATCTCCATC
GTGGTCGGCGGCAAGCTCTGGGGACTGTTCTCCTGCCATCACATGTCGCCCAAACTGATTCCCTACCCGGTG
CGCATGTCGTTCCAGATCTTCTCCCAGGTCTGCAGCGCCATCGTCGAGCGCCTGGAGCAGGGGCGTATCGCC
GAACTGCTGCGCGTGTCCACCGAGCGCAGGCTGGCCCTGGCTCGCCGCGCGCGGGACGCCGACGACCTGTTC
GGCGCACTGGCCCACCCGGACGATGGCATCGCCGCACTGATTCCCTGCGACGGCGCCCTGGTCATGCTCGGC
GGCCGCACCCTGAGCATCCGCGGCGACTTCGAGCGCCAGGCCGGGAATGTCCTGCAACGCCTGCAGCGCGAC
CCGGAACGGGACATCTACCACACCGACAACTGGCCGCAGCCCAGCGAGGACTCTCCGGACGGCGGCGACTGC
TGCGGTGTGCTGGCGATCCGTTTCCACCGCCAGGAATCGGGCTGGATCTTCTGGTTCCGCCACGAGGAAGTG
CACCGCATCCGCTGGGGCGGCAAGCCGGAAAAGCTGTTGACCATCGGCCCCTCCGGCCCGCGGCTGACCCCG
CGCGGCTCGTTCGAGGCCTGGGAGGAAGTGGTCCGCGGCCACTCCACGCCCTGGAGCGAAACCGACCTGGCG
ATCGCCGAAAAGCTGCGCCTGGACCTGATGGAACTGTGCCTCAACCATGCGGCCGAGGTCGACCGCATGCGC
CAGCGCCTGATCGCGGTGCTCGGCCACGACCTGCGCAACCCGTTGCAGTCGATCTCCATGGCGGCGGCCCTG
CTGTCCTCCAGCGACACCCGCACCACCGAACTGCGCCAACACATTTCCGCGTCCAGCAGCCGCATGGAACGG
CTGGTCAGCCAGATCCTCGATATGAGCCGCCTGCAATCGGGCATCGGCCTCACCGTGAACCCGGTCGACACC
GACGTCTCGCAACTGGTGCAGCAGATCGTCTGCGAAACCGACGTCGCCTATCCCGGCCTGGTGATCGAGATC
GCCATCGACCCGCAGGTTCGTGCCGTGGTCGACCCGGACCGCTACGCCCAGGTCGCCGCCAACCTGCTGAGC
AACGCCCGTCATCACGGCCTGCCCGGCCGGCCGGTGCTGGTCACCCTGACCCGCCAGGGCGACGAGGTGTGC
CTGAGCGTGCTCAACGAAACCAGCGGCCTCTCCGAAGCGCAGCTGGCCAACCTGTTCGAACCGTTCAAGCGC
GAGTCGGCGGACAACCAGCGCAACCGCAACGGCCTCGGTATCGGCCTGTACATCTCCCAGGCCATCGCCCAG
GCCCACCAGGGACGTATCGACGTGGACTGCCGCGACGACGTCATCACCTTCTGCCTGCGCCTGCCGGTGCGC
CAGGCGGAGACCGGCTCCTCGTCCTGA

Translation:

MTSITPVTLANCEDEPIHVPGAIQPHGALIALRADGMVLAASENIQALLGFVASPGSYLTPEQVGPEVLRML
EEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLL
SNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAY
TPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPV
RMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLG
GRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEV
HRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHAAEVDRMR
QRLIAVLGHDLRNPLQSISMAAALLSSSDTRTTELRQHISASSSRMERLVSQILDMSRLQSGIGLTVNPVDT
DVSQLVQQIVCETDVAYPGLVIEIAIDPQVRAVVDPDRYAQVAANLLSNARHHGLPGRPVLVTLTRQGDEVC
LSVLNETSGLSEAQLANLFEPFKRESADNQRNRNGLGIGLYISQAIAQAHQGRIDVDCRDDVITFCLRLPVR
QAETGSSS*

AnnotationID:272 GeneID:262

AnnotatorUID: diggins

Modification Date/Time: 2005-03-30 12:12:56

Gene Name:

Confidence Code: 3

GeneProduct: putative bacteriophytochrome

Cell Localization: ()

Synonyms: PA4117

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (28) Two-component regulatory systems

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4251

Secondary Functional Category(ies): signal transduction mechanisms

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO55420.1| (AE016862) bacteriophytochrome histidine kinase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 745

 Score =  350 bits (899), Expect = 1e-95
 Identities = 250/736 (33%), Positives = 370/736 (50%), Gaps = 61/736 (8%)

Structural Features:

COG4251, Bacteriophytochrome 
(light-regulated signal transduction histidine kinase) 
[Signal transduction mechanisms]
CD-Length = 750 residues,  99.7% aligned
Score =  917 bits (2372), Expect = 0.0
Identities = 339/754 (44%), Positives = 427/754 (56%), Gaps = 32/754 (4%)

Genomic Context:

Comment:

ReferenceID:527

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17669

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36852

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 262_cdd.html

URL:

Homologs By Global Alignment

Gene ID:262

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

439 PA4117_tr translation of PA4117 728 99.45 99.72 0 3732.0

23697 gb|AAG07504.1|AE004828_5 (AE004828) probable bacteriophytochrome [Pseudomonas aeruginosa PAO1] 728 99.45 99.72 0 3732.0

23698 emb|CAA62367.1| (X90856) putative sensor/transducer [Pseudomonas aeruginosa] 728 32.82 32.82 489 1192.0

23699 gb|AAF25217.1|AF202133_1 (AF202133) phytochrome [Tolypothrix sp. PCC 7601] 728 10.57 13.18 589 394.0

23700 gb|AAF25227.1|AF202143_1 (AF202143) phytochrome [Nostoc sp. PCC 8009] 728 10.30 13.18 589 391.0

GC ORFID: `43264`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4117`	Glimmer Score:
Start: `4030705`	Stop: `4032891`
Length: `2187`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4117 translation of PA4117`	Homolog Bit Score `1442.0`
Other Homologs: `t_PA4117 (ORF: GLIMMER)`
GC ORF Sequence
ATGACGAGCATCACCCCGGTTACCCTGGCGAACTGCGAGGACGAACCCATCCACGTGCCTGGCGCGATCCAG CCGCACGGGGCGCTGATCGCCCTGCGCGCGGACGGCATGGTCCTCGCGGCAAGCGAGAACATCCAGGCGCTA CTGGGTTTCGTCGCCTCGCCGGGTTCCTACCTGACGCCGGAGCAGGTGGGGCCGGAGGTCCTGCGCATGCTC GAAGAGGGACTGACCGGCAACGGCCCATGGTCGAACAGCGTCGAGACGCGGATCGGCGAACACCTGTTCGAC GTGATCGGCCACAGCTACAAGGAAGTGTTCTACCTGGAGTTCGAGATCCGCACCGCGGACACGCTGTCGATC ACCTCCTTCACCCTCAACGCCCAGCGCATCATCGCCCAGGTCCAGTTGCACAACGACACCGCCAGCCTGCTC AGCAACGTCACCGACGAACTGCGCCGGATGACCGGCTACGACCGGGTGATGGCCTACCGTTTCCGTCATGAC GACTCCGGCGAGGTGGTCGCCGAGAGCCGTCGCGAAGACCTCGAAAGCTACCTGGGGCAACGCTACCCGGCC TCGGACATCCCGGCCCAGGCGCGTCGCCTGTACATCCAGAACCCGATCAGGCTGATCGCCGACGTGGCCTAT ACGCCGATGCGCGTGTTTCCCGCGCTGAACCCGGAGACCAACGAATCGTTCGATCTCAGCTACAGCGTGCTG CGCAGCGTTTCGCCGATCCACTGCGAATACCTGACCAACATGGGCGTGCGCGCCTCGATGAGCATCTCCATC GTGGTCGGCGGCAAGCTCTGGGGACTGTTCTCCTGCCATCACATGTCGCCCAAACTGATTCCCTACCCGGTG CGCATGTCGTTCCAGATCTTCTCCCAGGTCTGCAGCGCCATCGTCGAGCGCCTGGAGCAGGGGCGTATCGCC GAACTGCTGCGCGTGTCCACCGAGCGCAGGCTGGCCCTGGCTCGCCGCGCGCGGGACGCCGACGACCTGTTC GGCGCACTGGCCCACCCGGACGATGGCATCGCCGCACTGATTCCCTGCGACGGCGCCCTGGTCATGCTCGGC GGCCGCACCCTGAGCATCCGCGGCGACTTCGAGCGCCAGGCCGGGAATGTCCTGCAACGCCTGCAGCGCGAC CCGGAACGGGACATCTACCACACCGACAACTGGCCGCAGCCCAGCGAGGACTCTCCGGACGGCGGCGACTGC TGCGGTGTGCTGGCGATCCGTTTCCACCGCCAGGAATCGGGCTGGATCTTCTGGTTCCGCCACGAGGAAGTG CACCGCATCCGCTGGGGCGGCAAGCCGGAAAAGCTGTTGACCATCGGCCCCTCCGGCCCGCGGCTGACCCCG CGCGGCTCGTTCGAGGCCTGGGAGGAAGTGGTCCGCGGCCACTCCACGCCCTGGAGCGAAACCGACCTGGCG ATCGCCGAAAAGCTGCGCCTGGACCTGATGGAACTGTGCCTCAACCATGCGGCCGAGGTCGACCGCATGCGC CAGCGCCTGATCGCGGTGCTCGGCCACGACCTGCGCAACCCGTTGCAGTCGATCTCCATGGCGGCGGCCCTG CTGTCCTCCAGCGACACCCGCACCACCGAACTGCGCCAACACATTTCCGCGTCCAGCAGCCGCATGGAACGG CTGGTCAGCCAGATCCTCGATATGAGCCGCCTGCAATCGGGCATCGGCCTCACCGTGAACCCGGTCGACACC GACGTCTCGCAACTGGTGCAGCAGATCGTCTGCGAAACCGACGTCGCCTATCCCGGCCTGGTGATCGAGATC GCCATCGACCCGCAGGTTCGTGCCGTGGTCGACCCGGACCGCTACGCCCAGGTCGCCGCCAACCTGCTGAGC AACGCCCGTCATCACGGCCTGCCCGGCCGGCCGGTGCTGGTCACCCTGACCCGCCAGGGCGACGAGGTGTGC CTGAGCGTGCTCAACGAAACCAGCGGCCTCTCCGAAGCGCAGCTGGCCAACCTGTTCGAACCGTTCAAGCGC GAGTCGGCGGACAACCAGCGCAACCGCAACGGCCTCGGTATCGGCCTGTACATCTCCCAGGCCATCGCCCAG GCCCACCAGGGACGTATCGACGTGGACTGCCGCGACGACGTCATCACCTTCTGCCTGCGCCTGCCGGTGCGC CAGGCGGAGACCGGCTCCTCGTCCTGA