ViewGene
Locus Name:
GeneID:
Location:

GeneID:2619
TrivialName: PA14_49640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49640
PAO1 Ortholog Locus:PA1141
Sequence Length:903
Protein Length:300
Start: 4416801
Stop: 4417703
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04530.1|AE004544_2 (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 299/300 (99%), Positives = 299/300 (99%)
Sequence:
ATGAGCGACAGTGAAAAATCGAATAGCCGCCTGTTCGACCTCGACCTGCTCCGCGCCATCGTCACGGTGGCC
GACTGCGGCAGCTTCACCACTGCCGCCGCGCGCCTGCACTCGACCCAGTCGACCGTCAGCCAGAAGGTTCGC
CGCCTGGAGGAAATGGCCGGACACCGCCTGCTGGAGCGCGGCAACCGCGACGTGTTGCCGACCGACGCCGGC
GATACGCTGCTCGGCTACGCCCGTCGCCTGCTGGCGCTGAACGACGAACTGGCCGAGGCGCTGTCCGGCGCC
ACGGTGGCGCTGACGGTGCGCATCGGCGTGCCGGACGACTTCGCCGCCGGCCGCACCACCGAGCGACTGGCG
GCCTTCAACCGGCGTTATCCACAGGTCAAGCTGGAAGTCACCAGCGGCATGAGCCGCGACCTCAGCGCCAGC
TACGACCGCGGCGAACTGGACCTGGTGCTGCTCAAGCAGCGCCGCGCCAGCCGCGAGGCACTGGCCTGCTGG
CCGGAAAAGACATGCTGGGTGGACAGCGCCAGGAACCCCTGCATCGACCTCGACCCACTGCCCATCGTCACC
TTCCCGCCGCGCGGGGTCTACCGCGACGAGATGATCGCCGCCCTGGAAGCGGTCGGCCGGCGCTGGCACATC
AGCTTCACCAGTTCCAGCCTCAGCGGCCTGCAATCGGCCATCGCCGACGGCATGGGTATAGGCCTGCTGCCG
TTGCGCGCGGTGAGCGCAGGCCACGCGGTGCTGCCGAAGAACGCCGGGCTGCCGGCGGTGGACGTGTTCGAA
GTGGCGCTGCTGCACCGGCCGGCGGCGGATCCGATGGTGAAGGCGCTGGCGCGCGTGCTGTCGCGGGTGCTG
GCGGAAGATACCCGGAGCCGGCCCGCATTCGAAAAATGA
Translation:
MSDSEKSNSRLFDLDLLRAIVTVADCGSFTTAAARLHSTQSTVSQKVRRLEEMAGHRLLERGNRDVLPTDAG
DTLLGYARRLLALNDELAEALSGATVALTVRIGVPDDFAAGRTTERLAAFNRRYPQVKLEVTSGMSRDLSAS
YDRGELDLVLLKQRRASREALACWPEKTCWVDSARNPCIDLDPLPIVTFPPRGVYRDEMIAALEAVGRRWHI
SFTSSSLSGLQSAIADGMGIGLLPLRAVSAGHAVLPKNAGLPAVDVFEVALLHRPAADPMVKALARVLSRVL
AEDTRSRPAFEK*
AnnotationID:2627GeneID:2619
AnnotatorUID: danlee
Modification Date/Time: 2004-09-10 13:01:37
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA1141
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator. Score: 124, 2e-29
pfam03466, LysR_substrate, LysR substrate binding domain. Score: 86.6, 3e-18






   
Genomic Context:






   
Comment:


















    ReferenceID:5241




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22386




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2619
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4329
                           PA1141_tr
                           translation of PA1141
                           300
                           99.66
                           99.66
                           0
                           1502.0
     

     
     
126909
                           gb|AAG04530.1|AE004544_2
                           (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           300
                           99.66
                           99.66
                           0
                           1502.0
     

     
     
126910
                           gb|AAN69135.1|AE016547_3
                           (AE016787) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           300
                           68.66
                           80.66
                           7
                           1069.0
     

     
     
4330
                           PA2497_tr
                           translation of PA2497
                           306
                           42.81
                           55.88
                           20
                           570.0
     

     
     
126913
                           gb|AAG05885.1|AE004677_2
                           (AE004677) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           306
                           42.81
                           55.88
                           20
                           570.0
     

     






      

          
GC ORFID: 45621How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1141Glimmer Score: 

          
Start: 537107Stop: 536205

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1141 translation of PA1141Homolog Bit Score 583.0

          
Other Homologs:  t_PA2497 (ORF: BLASTX 226.0), t_PA1141 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACAGTGAAAAATCGAATAGCCGCCTGTTCGACCTCGACCTGCTCCGCGCCATCGTCACGGTGGCC 
GACTGCGGCAGCTTCACCACTGCCGCCGCGCGCCTGCACTCGACCCAGTCGACCGTCAGCCAGAAGGTTCGC 
CGCCTGGAGGAAATGGCCGGACACCGCCTGCTGGAGCGCGGCAACCGCGACGTGTTGCCGACCGACGCCGGC 
GATACGCTGCTCGGCTACGCCCGTCGCCTGCTGGCGCTGAACGACGAACTGGCCGAGGCGCTGTCCGGCGCC 
ACGGTGGCGCTGACGGTGCGCATCGGCGTGCCGGACGACTTCGCCGCCGGCCGCACCACCGAGCGACTGGCG 
GCCTTCAACCGGCGTTATCCACAGGTCAAGCTGGAAGTCACCAGCGGCATGAGCCGCGACCTCAGCGCCAGC 
TACGACCGCGGCGAACTGGACCTGGTGCTGCTCAAGCAGCGCCGCGCCAGCCGCGAGGCACTGGCCTGCTGG 
CCGGAAAAGACATGCTGGGTGGACAGCGCCAGGAACCCCTGCATCGACCTCGACCCACTGCCCATCGTCACC 
TTCCCGCCGCGCGGGGTCTACCGCGACGAGATGATCGCCGCCCTGGAAGCGGTCGGCCGGCGCTGGCACATC 
AGCTTCACCAGTTCCAGCCTCAGCGGCCTGCAATCGGCCATCGCCGACGGCATGGGTATAGGCCTGCTGCCG 
TTGCGCGCGGTGAGCGCAGGCCACGCGGTGCTGCCGAAGAACGCCGGGCTGCCGGCGGTGGACGTGTTCGAA 
GTGGCGCTGCTGCACCGGCCGGCGGCGGATCCGATGGTGAAGGCGCTGGCGCGCGTGCTGTCGCGGGTGCTG 
GCGGAAGATACCCGGAGCCGGCCCGCATTCGAAAAATGA