ViewGene
Locus Name:
GeneID:
Location:

GeneID:2618
TrivialName: PA14_06460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06460
PAO1 Ortholog Locus:PA0495
Sequence Length:879
Protein Length:292
Start: 567171
Stop: 568049
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03884.1|AE004486_13 (AE004486) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 287/292 (98%), Positives = 290/292 (99%)
Sequence:
ATGCACGCCAACATCCGCTACAGCTTCGGCGGCGACGAGCACCTGTTCGCCGAGGTCGCCGAAGCCATGTCG
CTGGAAGCCTTCTTTCGCGGCATGGCGATCACCCGCGCGATCGAGGCCCTGCAATTGCCCGGGGTGCTCGAC
GTGTGCCTGGCCAACGCCTCGTTCCAGGTCCGCTTCGACCCCGACCGGCTGGCCCCGGAGGCGCTGCTGGAG
ACCGTGCGCGGCCTGGAAGCCGAGGCGGTCGCCGCGCGCAGCATCGAGACGCGTATCGTCGAAGTGCCGGTG
TTGTACAACGATCCCTGGACCCACGAGACCCTGATGCGCTTCCGCGACCGTCACCAGGACCCGGACTCCACC
GACCTCGAGTACGCCGCGCGGATCAACGGCTACGCCGACGTGCAGGCGTTCATCCAGGCGCACAGCGGCACG
CCGTGGTTCGTCTCGATGGTCGGTTTCGTTGCCGGCCTGCCGTTCATGTACCAGATGGTCGAGCGCGAACGG
CAGTTGCAGGTGCCCAAGTACCTGCGTCCGCGCATCGACACGCCGAAGCTGACCCTCGGCCACGGCGGTTGC
TTCGGCTGCATCTATTCGGTGCGCGGTGCCGGCGGCTACCAGATGTTCGGCGTGACTCCGGCGCCGATCTTC
GATCCCCGCCAGGGCCTGCCCTATCTCGAGGAATCGATGGTGTTCTTCCGCGCTGGCGACATCGTCCAGTTC
CGCCCCATCGAGCGGACCGAATACGAGCGCATGGCGGCCGAAGTCGAAGCGGGCACATTCGACCTGCGCATC
CGTCCGGTGAGTTTCGATCTCGACGCGTTCCTCGCCGATCCGCGAGGCTGCACGCAACGTCTGCAGGAGGTG
CTGTATGTCGATTAA
Translation:
MHANIRYSFGGDEHLFAEVAEAMSLEAFFRGMAITRAIEALQLPGVLDVCLANASFQVRFDPDRLAPEALLE
TVRGLEAEAVAARSIETRIVEVPVLYNDPWTHETLMRFRDRHQDPDSTDLEYAARINGYADVQAFIQAHSGT
PWFVSMVGFVAGLPFMYQMVERERQLQVPKYLRPRIDTPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIF
DPRQGLPYLEESMVFFRAGDIVQFRPIERTEYERMAAEVEAGTFDLRIRPVSFDLDAFLADPRGCTQRLQEV
LYVD*
AnnotationID:2626GeneID:2618
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:06
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA0495
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02682
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam02682, AHS1, Allophanate hydrolase subunit 1.
CD-Length = 201 residues,  96.5% aligned
Score = 94.3 bits (234), Expect = 1e-20
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 23/216 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5239




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22384




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33806




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2618_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2618
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4328
                           PA0495_tr
                           translation of PA0495
                           292
                           98.28
                           99.31
                           0
                           1505.0
     

     
     
126906
                           gb|AAG03884.1|AE004486_13
                           (AE004486) hypothetical protein PA0495 [Pseudomonas aeruginosa PAO1]
                           292
                           98.28
                           99.31
                           0
                           1505.0
     

     
     
126908
                           gb|AAO56428.1|
                           (AE016866) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           292
                           78.76
                           86.30
                           2
                           1224.0
     

     
     
126907
                           gb|AAN68529.1|AE016485_2
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           315
                           74.60
                           81.90
                           25
                           1247.0
     

     






      

          
GC ORFID: 45620How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0495Glimmer Score: 

          
Start: 6368513Stop: 6369391

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0495 translation of PA0495Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2722 (ORF: BLASTX 470.0), t_PA0495 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGCCAACATCCGCTACAGCTTCGGCGGCGACGAGCACCTGTTCGCCGAGGTCGCCGAAGCCATGTCG 
CTGGAAGCCTTCTTTCGCGGCATGGCGATCACCCGCGCGATCGAGGCCCTGCAATTGCCCGGGGTGCTCGAC 
GTGTGCCTGGCCAACGCCTCGTTCCAGGTCCGCTTCGACCCCGACCGGCTGGCCCCGGAGGCGCTGCTGGAG 
ACCGTGCGCGGCCTGGAAGCCGAGGCGGTCGCCGCGCGCAGCATCGAGACGCGTATCGTCGAAGTGCCGGTG 
TTGTACAACGATCCCTGGACCCACGAGACCCTGATGCGCTTCCGCGACCGTCACCAGGACCCGGACTCCACC 
GACCTCGAGTACGCCGCGCGGATCAACGGCTACGCCGACGTGCAGGCGTTCATCCAGGCGCACAGCGGCACG 
CCGTGGTTCGTCTCGATGGTCGGTTTCGTTGCCGGCCTGCCGTTCATGTACCAGATGGTCGAGCGCGAACGG 
CAGTTGCAGGTGCCCAAGTACCTGCGTCCGCGCATCGACACGCCGAAGCTGACCCTCGGCCACGGCGGTTGC 
TTCGGCTGCATCTATTCGGTGCGCGGTGCCGGCGGCTACCAGATGTTCGGCGTGACTCCGGCGCCGATCTTC 
GATCCCCGCCAGGGCCTGCCCTATCTCGAGGAATCGATGGTGTTCTTCCGCGCTGGCGACATCGTCCAGTTC 
CGCCCCATCGAGCGGACCGAATACGAGCGCATGGCGGCCGAAGTCGAAGCGGGCACATTCGACCTGCGCATC 
CGTCCGGTGAGTTTCGATCTCGACGCGTTCCTCGCCGATCCGCGAGGCTGCACGCAACGTCTGCAGGAGGTG 
CTGTATGTCGATTAA