ViewGene
Locus Name:
GeneID:
Location:

GeneID:2617
TrivialName: PA14_00460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00460
PAO1 Ortholog Locus:PA0037
Sequence Length:888
Protein Length:295
Start: 39223
Stop: 40110
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03427.1|AE004443_5 (AE004443) transcriptional regulator TrpI [Pseudomonas aeruginosa PAO1]
Identities = 292/295 (98%), Positives = 293/295 (99%)
Sequence:
ATGAGCCGCGACCTGCCCTCCCTGAATGCCCTGCGCGCTTTCGAAGCCGCTGCCCGGTTGCACAGCATCAGC
CTGGCGGCCGAGGAACTGCACGTTACCCATGGCGCCGTGAGCCGGCAGGTGCGGTTGCTCGAGGACGATCTC
GGGGTGGCCCTATTCGGCAAGGATGGACGCGGCGTAAAACTCACCGATTCCGGCGTTCGCCTGCGTGACGCC
TGCGGCGATGCGTTCGAGCGACTGCGTGGCGTCTGTGCCGAGCTGCGCCGGCAGACCGCCGAGGCCCCGTTC
GTCCTCGGCGTACCCGGCAGCCTGCTGGCGCGCTGGTTCATCCCGCGGCTGGACCGGCTCAACCGTGCCCTC
CCCGACCTGCGCCTGCAACTGTCCACCAGCGAGGGCGAGTTCGATCCGCGTCGTCCCGGCCTGGACGCCATG
CTCTGGTTCGCCGAGCCGCCCTGGCCGGCGGACATGCAGGTCTTCGAACTGGCGCCCGAGCGCATGGGCCCG
GTGGTCAGCCCGCGCCTGGCGCAGGAAACCGGCCTGGCCCAGGCGCCCGCCGCGCGGCTGTTGCAGGAGCCG
CTGCTGCATACCGCCTCGCGGCCCCAGGCCTGGCCGGCCTGGGCCGCGAGCCAGGGGCTGGCGGCGGAGGCG
CTGCGCTATGGCCAGGGGTTCGAGCATCTCTACTACCTGCTGGAAGCGGCGGTGGCGGGCCTCGGCGTGGCC
ATCGCCCCGGAGGCGCTGGTCCGCGACGATCTCGCCGCGGGCCGCCTGGCGGCGCCCTGGGGCTTCATCGAG
ACCGATGCGCGCCTGGCCCTGTGGGTACCGGCGCGCCTGCACGATCCGCGTGCCGGGCGCCTGGCGCATTGG
TTGCGGGAGCAGTTGGCAGGCTGA
Translation:
MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKLTDSGVRLRDA
CGDAFERLRGVCAELRRQTAEAPFVLGVPGSLLARWFIPRLDRLNRALPDLRLQLSTSEGEFDPRRPGLDAM
LWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGLAQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEA
LRYGQGFEHLYYLLEAAVAGLGVAIAPEALVRDDLAAGRLAAPWGFIETDARLALWVPARLHDPRAGRLAHW
LREQLAG*
AnnotationID:2625GeneID:2617
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 14:02:30
Gene Name:trpI
Confidence Code:1
GeneProduct:trpBA operon transcriptional activator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53711.1| (AE016856) trpBA operon transcriptional activator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 302

 Score =  424 bits (1091), Expect = e-118
 Identities = 210/293 (71%), Positives = 240/293 (81%)

>gb|AAN65718.1|AE016198_5 (AE016774) transcriptional regulator TrpI [Pseudomonas putida
           KT2440]
          Length = 298

 Score =  409 bits (1050), Expect = e-113
 Identities = 206/294 (70%), Positives = 231/294 (78%)

>gb|AAM41816.1| (AE012366) transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 298

 Score =  317 bits (811), Expect = 7e-86
 Identities = 172/294 (58%), Positives = 195/294 (66%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.3% aligned
Score =  105 bits (262), Expect = 6e-24
Identities = 86/295 (29%), Positives = 120/295 (40%), Gaps = 9/295 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5237




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22382




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33400




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2617_cdd.html


    		




 
URL:

















    ReferenceID:35514




  
Author/Investigator(s):
        Chang M, Hadero A, Crawford IP.





  
Title:
        Sequence of the Pseudomonas aeruginosa trpI activator gene and relatedness of trpI to other procaryotic regulatory genes.




  
PubMed:
        2492495


MedLine:
        




    
Source:
J Bacteriol. 1989 Jan;171(1):172-83.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2492495









           
Homologs By Global Alignment 

           

       



     
Gene ID:2617
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4326
                           PA0037_tr
                           translation of PA0037
                           295
                           98.98
                           99.32
                           0
                           1506.0
     

     
     
126895
                           gb|AAG03427.1|AE004443_5
                           (AE004443) transcriptional regulator TrpI [Pseudomonas aeruginosa PAO1]
                           295
                           98.98
                           99.32
                           0
                           1506.0
     

     
     
126896
                           emb|CAA36157.1|
                           (X51868) TrpI protein [Pseudomonas aeruginosa]
                           295
                           96.94
                           97.28
                           1
                           1467.0
     

     
     
126897
                           gb|AAD15136.1|
                           (M21093) activator protein [Pseudomonas aeruginosa]
                           295
                           95.25
                           96.94
                           2
                           1430.0
     

     
     
126898
                           gb|AAO53711.1|
                           (AE016856) trpBA operon transcriptional activator [Pseudomonas syringae pv. tomato str. DC3000]
                           302
                           69.53
                           79.47
                           7
                           1088.0
     

     






      

          
GC ORFID: 45619How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0037Glimmer Score: 

          
Start: 5840560Stop: 5841447

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0037 translation of PA0037Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2988 (ORF: BLASTX 450.0), t_PA2930 (ORF: BLASTX 191.0), t_PA0037 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCGACCTGCCCTCCCTGAATGCCCTGCGCGCTTTCGAAGCCGCTGCCCGGTTGCACAGCATCAGC 
CTGGCGGCCGAGGAACTGCACGTTACCCATGGCGCCGTGAGCCGGCAGGTGCGGTTGCTCGAGGACGATCTC 
GGGGTGGCCCTATTCGGCAAGGATGGACGCGGCGTAAAACTCACCGATTCCGGCGTTCGCCTGCGTGACGCC 
TGCGGCGATGCGTTCGAGCGACTGCGTGGCGTCTGTGCCGAGCTGCGCCGGCAGACCGCCGAGGCCCCGTTC 
GTCCTCGGCGTACCCGGCAGCCTGCTGGCGCGCTGGTTCATCCCGCGGCTGGACCGGCTCAACCGTGCCCTC 
CCCGACCTGCGCCTGCAACTGTCCACCAGCGAGGGCGAGTTCGATCCGCGTCGTCCCGGCCTGGACGCCATG 
CTCTGGTTCGCCGAGCCGCCCTGGCCGGCGGACATGCAGGTCTTCGAACTGGCGCCCGAGCGCATGGGCCCG 
GTGGTCAGCCCGCGCCTGGCGCAGGAAACCGGCCTGGCCCAGGCGCCCGCCGCGCGGCTGTTGCAGGAGCCG 
CTGCTGCATACCGCCTCGCGGCCCCAGGCCTGGCCGGCCTGGGCCGCGAGCCAGGGGCTGGCGGCGGAGGCG 
CTGCGCTATGGCCAGGGGTTCGAGCATCTCTACTACCTGCTGGAAGCGGCGGTGGCGGGCCTCGGCGTGGCC 
ATCGCCCCGGAGGCGCTGGTCCGCGACGATCTCGCCGCGGGCCGCCTGGCGGCGCCCTGGGGCTTCATCGAG 
ACCGATGCGCGCCTGGCCCTGTGGGTACCGGCGCGCCTGCACGATCCGCGTGCCGGGCGCCTGGCGCATTGG 
TTGCGGGAGCAGTTGGCAGGCTGA