ViewGene
Locus Name:
GeneID:
Location:

GeneID:2616
TrivialName: PA14_73050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73050
PAO1 Ortholog Locus:PA5539
Sequence Length:897
Protein Length:298
Start: 6504907
Stop: 6505803
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08924.1|AE004966_6 (AE004966) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 297/298 (99%), Positives = 297/298 (99%)
Sequence:
ATGAATGCCTTGACGCTTCCCGATATTGCCCGCCAGACCACCACCGCCGATCTTCCCCTGGACTGGGTCGGC
ATGCAGGGCATCGCCCTCCCCGTGCAGATCGGCGGGCAGAGGGTCGCCGCCGAAGCCGATGCCGGTGTCAGC
CTGGACGACCCGCAGGCCCGCGGCATCCATATGTCGCGCCTCTACCTGGCGCTGGCCGAACTGGAACAGGGC
GAGCTAGACCTTTCCCGCCTGCGCGCCGTCCTGCAACGCTTCCTCGACAGCCACGCCGGCCTGTCGCGTCGC
GCCTACCTGCGCCTGCGCCTCGCGCCGCTGCTGCGGCGTCCGGCGCTGGTCAGCCCGCTGAGCGGCTGGAAA
CGTTATCCACTGGTGCTGGACACGCGCCTGGAAGGCGATGACTTCCAGGCCGAAGTCCATCTCGAGCTGACC
TACTCCTCGACCTGCCCCTGTTCGGCGGCACTGGCCCGGCAATTGATCCAGGAGCGCTTCGACCAGGACTTC
GCCGGACAGCCGCTCGATCATGCCAGCGTGCTCGCCTGGCTCGGCAGTAGCGCCGGCATCGTCGCCACCCCG
CACAGCCAGCGCAGCAGCGCGCACCTGCGCATCGGCCTGGCGGAAGACTGCATCGGACTGCCCCTGGAAGAG
CTGGCGGATCTCGGCGAAAGCGCCCTCGGCACCGCGGTGCAGACTGCGGTGAAACGCGCCGACGAGCAGGCC
TTCGCCCTCGCCAACGGACAGAACCTGATGTTCTGCGAAGACGCGGTGCGCCGGCTGCACCGCGCCCTGCAG
GGTTATCCACAGGCGAGCCGGTTCTCCATACGGGTCGTCCATGCGGAAAGCCTGCATGCCCACGACGCCGTC
GCCGAAAGCCACTGGCAACGAGGTGCCGCATGA
Translation:
MNALTLPDIARQTTTADLPLDWVGMQGIALPVQIGGQRVAAEADAGVSLDDPQARGIHMSRLYLALAELEQG
ELDLSRLRAVLQRFLDSHAGLSRRAYLRLRLAPLLRRPALVSPLSGWKRYPLVLDTRLEGDDFQAEVHLELT
YSSTCPCSAALARQLIQERFDQDFAGQPLDHASVLAWLGSSAGIVATPHSQRSSAHLRIGLAEDCIGLPLEE
LADLGESALGTAVQTAVKRADEQAFALANGQNLMFCEDAVRRLHRALQGYPQASRFSIRVVHAESLHAHDAV
AESHWQRGAA*
AnnotationID:2624GeneID:2616
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5539
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5235




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22380




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33255




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2616_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2616
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4325
                           PA5539_tr
                           translation of PA5539
                           298
                           99.66
                           99.66
                           0
                           1505.0
     

     
     
126887
                           gb|AAG08924.1|AE004966_6
                           (AE004966) hypothetical protein PA5539 [Pseudomonas aeruginosa PAO1]
                           298
                           99.66
                           99.66
                           0
                           1505.0
     

     
     
126889
                           gb|AAO56083.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           307
                           47.23
                           60.26
                           15
                           590.0
     

     
     
126888
                           gb|AAR07797.1|
                           (AY378100) hypothetical protein LV189 [Klebsiella pneumoniae]
                           321
                           46.72
                           58.56
                           33
                           618.0
     

     
     
126890
                           gb|AAN68931.1|AE016524_6
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           329
                           45.89
                           56.53
                           36
                           595.0
     

     






      

          
GC ORFID: 45618How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5539Glimmer Score: 

          
Start: 5768596Stop: 5769492

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5539 translation of PA5539Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1232 (ORF: BLASTX 224.0), t_PA5539 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCCTTGACGCTTCCCGATATTGCCCGCCAGACCACCACCGCCGATCTTCCCCTGGACTGGGTCGGC 
ATGCAGGGCATCGCCCTCCCCGTGCAGATCGGCGGGCAGAGGGTCGCCGCCGAAGCCGATGCCGGTGTCAGC 
CTGGACGACCCGCAGGCCCGCGGCATCCATATGTCGCGCCTCTACCTGGCGCTGGCCGAACTGGAACAGGGC 
GAGCTAGACCTTTCCCGCCTGCGCGCCGTCCTGCAACGCTTCCTCGACAGCCACGCCGGCCTGTCGCGTCGC 
GCCTACCTGCGCCTGCGCCTCGCGCCGCTGCTGCGGCGTCCGGCGCTGGTCAGCCCGCTGAGCGGCTGGAAA 
CGTTATCCACTGGTGCTGGACACGCGCCTGGAAGGCGATGACTTCCAGGCCGAAGTCCATCTCGAGCTGACC 
TACTCCTCGACCTGCCCCTGTTCGGCGGCACTGGCCCGGCAATTGATCCAGGAGCGCTTCGACCAGGACTTC 
GCCGGACAGCCGCTCGATCATGCCAGCGTGCTCGCCTGGCTCGGCAGTAGCGCCGGCATCGTCGCCACCCCG 
CACAGCCAGCGCAGCAGCGCGCACCTGCGCATCGGCCTGGCGGAAGACTGCATCGGACTGCCCCTGGAAGAG 
CTGGCGGATCTCGGCGAAAGCGCCCTCGGCACCGCGGTGCAGACTGCGGTGAAACGCGCCGACGAGCAGGCC 
TTCGCCCTCGCCAACGGACAGAACCTGATGTTCTGCGAAGACGCGGTGCGCCGGCTGCACCGCGCCCTGCAG 
GGTTATCCACAGGCGAGCCGGTTCTCCATACGGGTCGTCCATGCGGAAAGCCTGCATGCCCACGACGCCGTC 
GCCGAAAGCCACTGGCAACGAGGTGCCGCATGA