ViewGene
Locus Name:
GeneID:
Location:

GeneID:2614
TrivialName: PA14_25880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25880
PAO1 Ortholog Locus:PA2951
Sequence Length:930
Protein Length:309
Start: 2257640
Stop: 2258569
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06339.1|AE004721_7 (AE004721) electron transfer flavoprotein alpha-subunit [Pseudomonas aeruginosa PAO1]
Identities = 309/309 (100%), Positives = 309/309 (100%)
Sequence:
ATGGCTATCCTGGTTATCGCTGAGCACAACAACGCGGCCCTGGCGGCTGCCACCCTGAACACTGTTGCCGCT
GCCAAGGCCATTGGCGGCGACATCCACGTGCTGGTCGCCGGACAGAACGTTGCCGCCGTGGCCGAAGCCGCC
GCCAAGGTCGAGGGCGTCTCCAAGGTGCTGGTCGCCGACAACGCCGCCTACGCCCATCAACTGCCGGAAAAC
GTCGCACCGCTGATCGCCGAGCTGGGCAAGAACTACAGCCACGTGCTGGCCCCGGCTACCACCAACGGCAAG
AACTTCCTGCCGCGCGTCGCCGCGCTGCTGGACGTCGACCAGATCTCCGAGATCGTCGAAGTGGTCAGCCCC
GACACCTTCAAGCGTCCGATCTACGCCGGTAACGCCATCGCTACCGTGCAGTCCTCGGCTGCGGTCAAGGTG
ATCACCGTGCGTACCACCGGCTTCGACGCCGTCGCCGCCGAAGGCGGTTCGGCTGCCGTCGAGCAGGTTTCC
GGCCCGGCCGATGCCGGCAAGTCCGCCTTCGTCGGCGAAGAGCTGGCCAAGTCCGACCGTCCGGAACTGACC
GCTGCCAAGATCGTGGTCTCCGGCGGCCGCGGCATGCAGAACGGCGACAACTTCAAGATCCTCTACGCCCTG
GCCGACAAGCTGGGTGCCGCAGTCGGCGCTTCCCGCGCCGCGGTCGACGCCGGTTTCGTGCCGAACGACATG
CAGGTCGGCCAGACCGGCAAGATCGTCGCCCCGCAGCTGTACATCGCGGTGGGCATCTCCGGCGCCATCCAG
CACCTGGCGGGCATGAAGGACTCGAAGGTGATCGTCGCGATCAACAAGGACGAAGAGGCGCCGATCTTCCAG
GTCGCCGACTACGGCCTGGTCGCCGACCTGTTCGACGCCGTACCGGAGCTGGAAAAGGCCGTCTGA
Translation:
MAILVIAEHNNAALAAATLNTVAAAKAIGGDIHVLVAGQNVAAVAEAAAKVEGVSKVLVADNAAYAHQLPEN
VAPLIAELGKNYSHVLAPATTNGKNFLPRVAALLDVDQISEIVEVVSPDTFKRPIYAGNAIATVQSSAAVKV
ITVRTTGFDAVAAEGGSAAVEQVSGPADAGKSAFVGEELAKSDRPELTAAKIVVSGGRGMQNGDNFKILYAL
ADKLGAAVGASRAAVDAGFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQ
VADYGLVADLFDAVPELEKAV*
AnnotationID:2622GeneID:2614
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:05
Gene Name:etfA
Confidence Code:2
GeneProduct:electron transfer flavoprotein alpha-subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2025,pfam00766
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69782.1|AE016614_8 (AE016789) electron transfer flavoprotein, alpha subunit
           [Pseudomonas putida KT2440]
          Length = 309

 Score =  511 bits (1316), Expect = e-144
 Identities = 270/309 (87%), Positives = 282/309 (91%)

>gb|AAO55702.1| (AE016863) electron transfer flavoprotein, alpha subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 309

 Score =  503 bits (1296), Expect = e-142
 Identities = 265/309 (85%), Positives = 279/309 (90%)

>emb|CAE35123.1| (BX640451) electron transfer flavoprotein alpha-subunit [Bordetella
           bronchiseptica]
          Length = 310

 Score =  412 bits (1060), Expect = e-114
 Identities = 219/309 (70%), Positives = 247/309 (79%)








 
Structural Features:
COG2025, FixB, Electron transfer flavoprotein, alpha subunit 
[Energy production and conversion]
CD-Length = 313 residues,  99.0% aligned
Score =  306 bits (785), Expect = 2e-84
Identities = 180/315 (57%), Positives = 213/315 (67%), Gaps = 11/315 (3%)

pfam00766, ETF_alpha, Electron transfer flavoprotein alpha subunit. 
CD-Length = 280 residues, 100.0% aligned
Score =  260 bits (667), Expect = 1e-70
Identities = 139/280 (49%), Positives = 174/280 (62%), Gaps = 10/280 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5231




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22376




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36099




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2614_cdd.html


    		




 
URL:

















    ReferenceID:36428




  
Author/Investigator(s):
        Boynton ZL, Bennet GN, Rudolph FB.





  
Title:
        Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824.




  
PubMed:
        8655474


MedLine:
        




    
Source:
J Bacteriol. 1996 Jun;178(11):3015-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8655474









           
Homologs By Global Alignment 

           

       



     
Gene ID:2614
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4323
                           PA2951_tr
                           translation of PA2951
                           309
                           99.99
                           99.99
                           0
                           1505.0
     

     
     
126834
                           gb|AAG06339.1|AE004721_7
                           (AE004721) electron transfer flavoprotein alpha-subunit [Pseudomonas aeruginosa PAO1]
                           309
                           99.99
                           99.99
                           0
                           1505.0
     

     
     
126835
                           gb|AAN69782.1|AE016614_8
                           (AE016789) electron transfer flavoprotein, alpha subunit [Pseudomonas putida KT2440]
                           309
                           87.37
                           91.26
                           0
                           1316.0
     

     
     
126836
                           gb|AAO55702.1|
                           (AE016863) electron transfer flavoprotein, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           309
                           85.76
                           90.29
                           0
                           1296.0
     

     
     
126838
                           emb|CAE33948.1|
                           (BX640447) electron transfer flavoprotein alpha-subunit [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           309
                           70.87
                           79.93
                           0
                           1060.0
     

     






      

          
GC ORFID: 45616How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2951Glimmer Score: 

          
Start: 2696285Stop: 2695356

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2951 translation of PA2951Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene981 (ORF: BLASTX 503.0), psyr_15may02_Scaffold1_revised_gene295 (ORF: BLASTX 501.0), t_PA2951 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTATCCTGGTTATCGCTGAGCACAACAACGCGGCCCTGGCGGCTGCCACCCTGAACACTGTTGCCGCT 
GCCAAGGCCATTGGCGGCGACATCCACGTGCTGGTCGCCGGACAGAACGTTGCCGCCGTGGCCGAAGCCGCC 
GCCAAGGTCGAGGGCGTCTCCAAGGTGCTGGTCGCCGACAACGCCGCCTACGCCCATCAACTGCCGGAAAAC 
GTCGCACCGCTGATCGCCGAGCTGGGCAAGAACTACAGCCACGTGCTGGCCCCGGCTACCACCAACGGCAAG 
AACTTCCTGCCGCGCGTCGCCGCGCTGCTGGACGTCGACCAGATCTCCGAGATCGTCGAAGTGGTCAGCCCC 
GACACCTTCAAGCGTCCGATCTACGCCGGTAACGCCATCGCTACCGTGCAGTCCTCGGCTGCGGTCAAGGTG 
ATCACCGTGCGTACCACCGGCTTCGACGCCGTCGCCGCCGAAGGCGGTTCGGCTGCCGTCGAGCAGGTTTCC 
GGCCCGGCCGATGCCGGCAAGTCCGCCTTCGTCGGCGAAGAGCTGGCCAAGTCCGACCGTCCGGAACTGACC 
GCTGCCAAGATCGTGGTCTCCGGCGGCCGCGGCATGCAGAACGGCGACAACTTCAAGATCCTCTACGCCCTG 
GCCGACAAGCTGGGTGCCGCAGTCGGCGCTTCCCGCGCCGCGGTCGACGCCGGTTTCGTGCCGAACGACATG 
CAGGTCGGCCAGACCGGCAAGATCGTCGCCCCGCAGCTGTACATCGCGGTGGGCATCTCCGGCGCCATCCAG 
CACCTGGCGGGCATGAAGGACTCGAAGGTGATCGTCGCGATCAACAAGGACGAAGAGGCGCCGATCTTCCAG 
GTCGCCGACTACGGCCTGGTCGCCGACCTGTTCGACGCCGTACCGGAGCTGGAAAAGGCCGTCTGA