ViewGene
Locus Name:
GeneID:
Location:

GeneID:2613
TrivialName: PA14_26860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26860
PAO1 Ortholog Locus:PA2879
Sequence Length:891
Protein Length:296
Start: 2336587
Stop: 2337477
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06267.1|AE004714_4 (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 295/296 (99%), Positives = 295/296 (99%)
Sequence:
ATGCATTTGTCGCCCGAATCCCTCGAGGCCTTCGTCCAGGCCGTTTCCCTCGGCTCCTTCAGCGCCGCCGCG
CGCAAGCTGGGCAAGAGCCAGTCGACCGTCAGCGAGGCCATTGCCCGGCTGGAGATCGACCTCGGCCTGGAA
CTCTTCGACCGCAGTGGCCGCCAGCCGCAACTGACCGAGGCCGGGCGCACGCTGCTGGGACGGGTCGAGGAG
GTCCTCGGTGCATCCGACCGCCTGCGCCGGGTCGCCGCGCTGCTCGCCGGCGGCTCGGAGCCACGGGTGACC
CTGGCGCTATCCGACACCTACCATTCGGCGCGCTACGAGGCGCGCCTGGCCGAACTGGACGAGCGTTACCCT
GAGCTGGAGTTCGAATGCCTGATCGCCGAGGACCAGGACGTGATCGCCCAGGTCAGCCGCGGCCGCGTCACC
CTCGGCCTGCTCGCCGCGCAGCCGCACTACCCGCCGGAGCTGGGCGTGGCGGCGGTCGCCGAGCGTGCCGAG
TTCGGCCTGTTCGCCGCCGTCGACCATCCGCTGGCGGGCCTGGAGCGGGTCAGCGAGCGCGACCTTTCCGAA
TGGCGTCTGCTGCGCCTGAACACCTATAGCGAGACCGGCGCGGCGATCAACGACGGCCTGCCGTCCAGCGGC
GGGCGCTGCTGGTCGGCGCCCAACTACCTGTTGCTGCTGGAAATGGCCACCCACGGCTTCGGTTGGGCCGAG
CTGCCGCGCTGGCTGGTCAGCGGCTACGCCAACGGGCGGCTAAAGGAGTTGCCGGTGTCCGGCTGGCCGCGC
AGCCAGGCGGTGGATGTGGTCTGGTCGCGGCAGCGGCCGTTGGGACCGGCGGCCAACTGGTTGCTGGACCGC
TTGCTGGATCGCGACCTGCCTATCTAG
Translation:
MHLSPESLEAFVQAVSLGSFSAAARKLGKSQSTVSEAIARLEIDLGLELFDRSGRQPQLTEAGRTLLGRVEE
VLGASDRLRRVAALLAGGSEPRVTLALSDTYHSARYEARLAELDERYPELEFECLIAEDQDVIAQVSRGRVT
LGLLAAQPHYPPELGVAAVAERAEFGLFAAVDHPLAGLERVSERDLSEWRLLRLNTYSETGAAINDGLPSSG
GRCWSAPNYLLLLEMATHGFGWAELPRWLVSGYANGRLKELPVSGWPRSQAVDVVWSRQRPLGPAANWLLDR
LLDRDLPI*
AnnotationID:2621GeneID:2613
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:hpkR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative DNA binding protein HpkR
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57060.1| (AE016868) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 294

 Score =  358 bits (918), Expect = 3e-98
 Identities = 183/290 (63%), Positives = 220/290 (75%), Gaps = 1/290 (0%)

>gb|AAC61657.1| (AF001355) DNA binding protein HpkR [Pseudomonas syringae pv.
           syringae]
          Length = 357

 Score =  340 bits (872), Expect = 6e-93
 Identities = 176/273 (64%), Positives = 206/273 (75%), Gaps = 1/273 (0%)

>emb|CAD18665.1| (AL646085) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 294

 Score =  310 bits (794), Expect = 7e-84
 Identities = 162/292 (55%), Positives = 198/292 (67%), Gaps = 2/292 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.6% aligned
Score =  120 bits (302), Expect = 2e-28
Identities = 89/290 (30%), Positives = 121/290 (41%), Gaps = 6/290 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5229




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22374




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36170




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2613_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2613
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4322
                           PA2879_tr
                           translation of PA2879
                           296
                           99.66
                           99.66
                           0
                           1505.0
     

     
     
126823
                           gb|AAG06267.1|AE004714_4
                           (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           296
                           99.66
                           99.66
                           0
                           1505.0
     

     
     
126824
                           gb|AAO57060.1|
                           (AE016868) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           299
                           61.53
                           73.91
                           8
                           915.0
     

     
     
126826
                           emb|CAD18665.1|
                           (AL646085) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           298
                           54.36
                           66.44
                           6
                           794.0
     

     
     
126827
                           gb|AAQ60352.1|
                           (AE016919) probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472]
                           300
                           51.33
                           64.33
                           14
                           745.0
     

     






      

          
GC ORFID: 45615How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2879Glimmer Score: 

          
Start: 2617339Stop: 2616449

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2879 translation of PA2879Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene7990 (ORF: BLASTX 363.0), t_PA2879 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATTTGTCGCCCGAATCCCTCGAGGCCTTCGTCCAGGCCGTTTCCCTCGGCTCCTTCAGCGCCGCCGCG 
CGCAAGCTGGGCAAGAGCCAGTCGACCGTCAGCGAGGCCATTGCCCGGCTGGAGATCGACCTCGGCCTGGAA 
CTCTTCGACCGCAGTGGCCGCCAGCCGCAACTGACCGAGGCCGGGCGCACGCTGCTGGGACGGGTCGAGGAG 
GTCCTCGGTGCATCCGACCGCCTGCGCCGGGTCGCCGCGCTGCTCGCCGGCGGCTCGGAGCCACGGGTGACC 
CTGGCGCTATCCGACACCTACCATTCGGCGCGCTACGAGGCGCGCCTGGCCGAACTGGACGAGCGTTACCCT 
GAGCTGGAGTTCGAATGCCTGATCGCCGAGGACCAGGACGTGATCGCCCAGGTCAGCCGCGGCCGCGTCACC 
CTCGGCCTGCTCGCCGCGCAGCCGCACTACCCGCCGGAGCTGGGCGTGGCGGCGGTCGCCGAGCGTGCCGAG 
TTCGGCCTGTTCGCCGCCGTCGACCATCCGCTGGCGGGCCTGGAGCGGGTCAGCGAGCGCGACCTTTCCGAA 
TGGCGTCTGCTGCGCCTGAACACCTATAGCGAGACCGGCGCGGCGATCAACGACGGCCTGCCGTCCAGCGGC 
GGGCGCTGCTGGTCGGCGCCCAACTACCTGTTGCTGCTGGAAATGGCCACCCACGGCTTCGGTTGGGCCGAG 
CTGCCGCGCTGGCTGGTCAGCGGCTACGCCAACGGGCGGCTAAAGGAGTTGCCGGTGTCCGGCTGGCCGCGC 
AGCCAGGCGGTGGATGTGGTCTGGTCGCGGCAGCGGCCGTTGGGACCGGCGGCCAACTGGTTGCTGGACCGC 
TTGCTGGATCGCGACCTGCCTATCTAG