ViewGene
Locus Name:
GeneID:
Location:

GeneID:2611
TrivialName: PA14_33530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33530
PAO1 Ortholog Locus:PA2410
Sequence Length:918
Protein Length:305
Start: 2951029
Stop: 2950112
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05798.1|AE004668_8 (AE004668) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/305 (99%), Positives = 304/305 (99%)
Sequence:
ATGAACCTGAAACCCCATTGCCTCGCCCTGGCCCTGGCTTGCGCCGGACTCGCCGGCCCGCTCCCGGCCCTC
GCCGCGACGCCGGCCGCGGCTCAGTCCGCGCAAGTCACGGTACTGGCCAGCCTGCCGGTCACCCACGCCCTC
GCCGAACGCCTGCTGCGGGACACCGAGGTCAAGCTGCAACGGGTCGCCCCGGCCAACCTGCCGGCCAGCCGC
CAGGCCTCGTTCTTCGCCGGGCGCGGCGCCGGCGGCCTGGCCAAGGCCGCCGGGCAGGCCGACGCGGTGATC
GACCTGCGCTCGATCTGGAGCGACGACCCGCTCTACCCGCTGGCCCGCCGTAGCAATATCCGTATCGTCGAG
ATCGACGCCGCGCGTCCGGTGGATGGCGCCCTGCCCGGCATCGCCCTGCGCCCCGGCAGCGACCTGCATGCC
TACCCCTGGCTCAACCCGACCAACCTGGGGCGCATGGCCGATGTCCTTGCCAGCGACCTGGAACGCCTGGCG
CCCGGCGCCGCAGCGACCATCCAGGCCAACCTGGCGACACTGAAGAAGCAATTGCTGGAAGCGACCGCCAGT
AACGAGACTCGCCTGGCGAAGGCCGACAACCTCAGCGTGATCAGCCTCTCCGAACGCCTCGGCTACCTGCTC
GCCGGGCTCAACCTGGACCCGCTGGACGTGGAGATCCAGGCCGACGACGGCTGGACCGAGACCAATATCCAG
GCTTTCGCCGAGGAGCTGAAGAGCGAGGACATCGCCCTGGTCCTGCACCATCGCCAGCCACCCAAGCCCCTC
GCCGATGCCATCGCCGCCAGCGGCGCACGCCTGGTAGTGGTGGACACCGAGGCGGCGGACCCGGTGGCCGGC
CTGGAAAGCGACATGAAAGCGATAGTCGAAGGGCTGCTGGCCGGTAAAGGCTGA
Translation:
MNLKPHCLALALACAGLAGPLPALAATPAAAQSAQVTVLASLPVTHALAERLLRDTEVKLQRVAPANLPASR
QASFFAGRGAGGLAKAAGQADAVIDLRSIWSDDPLYPLARRSNIRIVEIDAARPVDGALPGIALRPGSDLHA
YPWLNPTNLGRMADVLASDLERLAPGAAATIQANLATLKKQLLEATASNETRLAKADNLSVISLSERLGYLL
AGLNLDPLDVEIQADDGWTETNIQAFAEELKSEDIALVLHHRQPPKPLADAIAASGARLVVVDTEAADPVAG
LESDMKAIVEGLLAGKG*
AnnotationID:2619GeneID:2611
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:43
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, periplasmic substrate-binding protein
Cell Localization:()
Synonyms:PA2410
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:putative ABC-type metal ion transport system, periplasmic component/surface adhesin
Functional Category Confidence Code:5
COGs:COG0803
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG0803, LraI, ABC-type metal ion transport system, 
periplasmic component/surface adhesin 
[Inorganic ion transport and metabolism]
CD-Length = 303 residues,  99.0% aligned
Score =  106 bits (267), Expect = 2e-24
Identities = 50/311 (16%), Positives = 106/311 (34%), Gaps = 23/311 (7%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5225




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22370




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32954




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2611_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2611
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4320
                           PA2410_tr
                           translation of PA2410
                           305
                           99.34
                           99.67
                           0
                           1506.0
     

     
     
126818
                           gb|AAG05798.1|AE004668_8
                           (AE004668) hypothetical protein PA2410 [Pseudomonas aeruginosa PAO1]
                           305
                           99.34
                           99.67
                           0
                           1506.0
     

     
     
126819
                           gb|AAN69398.1|AE016576_8
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           306
                           60.78
                           74.18
                           20
                           858.0
     

     
     
126820
                           gb|AAO55655.1|
                           (AE016863) ABC transporter, periplasmic substrate-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           316
                           53.79
                           68.98
                           18
                           785.0
     

     






      

          
GC ORFID: 45613How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2410Glimmer Score: 

          
Start: 2002887Stop: 2003804

          
Length: 918


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2410 translation of PA2410Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene487 (ORF: BLASTX 306.0), t_PA2410 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGAAACCCCATTGCCTCGCCCTGGCCCTGGCTTGCGCCGGACTCGCCGGCCCGCTCCCGGCCCTC 
GCCGCGACGCCGGCCGCGGCTCAGTCCGCGCAAGTCACGGTACTGGCCAGCCTGCCGGTCACCCACGCCCTC 
GCCGAACGCCTGCTGCGGGACACCGAGGTCAAGCTGCAACGGGTCGCCCCGGCCAACCTGCCGGCCAGCCGC 
CAGGCCTCGTTCTTCGCCGGGCGCGGCGCCGGCGGCCTGGCCAAGGCCGCCGGGCAGGCCGACGCGGTGATC 
GACCTGCGCTCGATCTGGAGCGACGACCCGCTCTACCCGCTGGCCCGCCGTAGCAATATCCGTATCGTCGAG 
ATCGACGCCGCGCGTCCGGTGGATGGCGCCCTGCCCGGCATCGCCCTGCGCCCCGGCAGCGACCTGCATGCC 
TACCCCTGGCTCAACCCGACCAACCTGGGGCGCATGGCCGATGTCCTTGCCAGCGACCTGGAACGCCTGGCG 
CCCGGCGCCGCAGCGACCATCCAGGCCAACCTGGCGACACTGAAGAAGCAATTGCTGGAAGCGACCGCCAGT 
AACGAGACTCGCCTGGCGAAGGCCGACAACCTCAGCGTGATCAGCCTCTCCGAACGCCTCGGCTACCTGCTC 
GCCGGGCTCAACCTGGACCCGCTGGACGTGGAGATCCAGGCCGACGACGGCTGGACCGAGACCAATATCCAG 
GCTTTCGCCGAGGAGCTGAAGAGCGAGGACATCGCCCTGGTCCTGCACCATCGCCAGCCACCCAAGCCCCTC 
GCCGATGCCATCGCCGCCAGCGGCGCACGCCTGGTAGTGGTGGACACCGAGGCGGCGGACCCGGTGGCCGGC 
CTGGAAAGCGACATGAAAGCGATAGTCGAAGGGCTGCTGGCCGGTAAAGGCTGA