ViewGene
Locus Name:
GeneID:
Location:

GeneID:2610
TrivialName: PA14_35250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35250
PAO1 Ortholog Locus:PA2267
Sequence Length:897
Protein Length:298
Start: 3134936
Stop: 3135832
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05655.1|AE004652_8 (AE004652) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 295/298 (98%), Positives = 297/298 (99%)
Sequence:
ATGCAAAAGATGAATGCACCGCTGCAATATCGCCTGGACCATGCCGATCTTGCCCTGGTCCTCGCCCTGGTT
CGCGGCGGTAGCCTGGCGCGGGCCGCAGAGTTGCTCAGGGTCGATGTGTCGACGGTCTTCCGGGCCATCCGC
CGGCTGGAGAAGAACCTCGGCAAGGCGTTGTTCGACAAGAGCCGCAGCGGCTACCTGGCGAACCAGACCGCC
CGCCGCCTGGCGCAGCAGGCAGAACTGGCGGAACAGGCGCTGGAGGCGGCGCGCATCGGCCTCGAACTGGAG
CGCGAGGTGCTCAGCGGTACCGTGCGCCTGACCTGCTCCGACGCCGTCCTGCATGGCCTGCTGCTGCCGGCG
CTGGCGCGCTTCATGCCTGGCTATCCGGCCCTGCAACTGGAGCTGGCGACCTCCAACGACTTTGCCAACCTC
AGCCGGCGCGACGCCGACATCGCCCTGCGCATGACCCGCACGCCGCCGGAACACCTGGTCGGGCGCAACCTC
GGCGAGGTGCGCTACGTGCTCTGCGCCAGCGAACGCTACCTGGAGGGCCGCGACGCGACGGAGCCCGCCATG
CTGCACTGGATCGCCCCGGACGATTTCCTTCCCGACCACCCGAGCGTGGTCTGGCGTCGTCGACACTATCCC
GGGGTATTGCCGGCCTACCGCTGCAACGGCGTGCTGGCGGTCTCCGAGATGGCCCGCGCCGGCCTCGGCCTG
GCGGCGATCCCCGCCTACCTGCTGCGCGACGGCGACGGCCTGCGGGTACTGGACGCCGACCTCGAGGGCTGC
GCCAGCGCCCTGTGGCTGCTGACCCGTCCGGACTGCCGGGCGTTGCGCTCGGTGGTCGCGTTGTTCGACGAG
CTGGGGCGGCATGTGCGCTTGGGTGATGAGTGA
Translation:
MQKMNAPLQYRLDHADLALVLALVRGGSLARAAELLRVDVSTVFRAIRRLEKNLGKALFDKSRSGYLANQTA
RRLAQQAELAEQALEAARIGLELEREVLSGTVRLTCSDAVLHGLLLPALARFMPGYPALQLELATSNDFANL
SRRDADIALRMTRTPPEHLVGRNLGEVRYVLCASERYLEGRDATEPAMLHWIAPDDFLPDHPSVVWRRRHYP
GVLPAYRCNGVLAVSEMARAGLGLAAIPAYLLRDGDGLRVLDADLEGCASALWLLTRPDCRALRSVVALFDE
LGRHVRLGDE*
AnnotationID:2618GeneID:2610
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:38
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2267
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70865.1|AE016730_11 (AE016794) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 349

 Score =  353 bits (905), Expect = 9e-97
 Identities = 179/293 (61%), Positives = 221/293 (75%), Gaps = 1/293 (0%)

>emb|CAD17096.1| (AL646074) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 294

 Score =  251 bits (641), Expect = 4e-66
 Identities = 136/293 (46%), Positives = 183/293 (62%), Gaps = 1/293 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.3% aligned
Score = 98.9 bits (245), Expect = 6e-22
Identities = 81/292 (27%), Positives = 114/292 (39%), Gaps = 9/292 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues, 100.0% aligned
Score = 75.4 bits (185), Expect = 7e-15
Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 11/209 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5223




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22368




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32512




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2610_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2610
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4319
                           PA2267_tr
                           translation of PA2267
                           298
                           98.99
                           99.66
                           0
                           1505.0
     

     
     
126814
                           gb|AAG05655.1|AE004652_8
                           (AE004652) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           298
                           98.99
                           99.66
                           0
                           1505.0
     

     
     
126816
                           gb|AAO56396.1|
                           (AE016866) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           305
                           59.34
                           74.09
                           12
                           889.0
     

     
     
126815
                           gb|AAN70865.1|AE016730_11
                           (AE016794) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           352
                           51.42
                           63.06
                           57
                           901.0
     

     
     
126817
                           emb|CAD17096.1|
                           (AL646074) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           303
                           45.21
                           61.05
                           14
                           646.0
     

     






      

          
GC ORFID: 45612How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2267Glimmer Score: 

          
Start: 1818980Stop: 1818084

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2267 translation of PA2267Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene309 (ORF: BLASTX 348.0), t_PA2267 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAAAGATGAATGCACCGCTGCAATATCGCCTGGACCATGCCGATCTTGCCCTGGTCCTCGCCCTGGTT 
CGCGGCGGTAGCCTGGCGCGGGCCGCAGAGTTGCTCAGGGTCGATGTGTCGACGGTCTTCCGGGCCATCCGC 
CGGCTGGAGAAGAACCTCGGCAAGGCGTTGTTCGACAAGAGCCGCAGCGGCTACCTGGCGAACCAGACCGCC 
CGCCGCCTGGCGCAGCAGGCAGAACTGGCGGAACAGGCGCTGGAGGCGGCGCGCATCGGCCTCGAACTGGAG 
CGCGAGGTGCTCAGCGGTACCGTGCGCCTGACCTGCTCCGACGCCGTCCTGCATGGCCTGCTGCTGCCGGCG 
CTGGCGCGCTTCATGCCTGGCTATCCGGCCCTGCAACTGGAGCTGGCGACCTCCAACGACTTTGCCAACCTC 
AGCCGGCGCGACGCCGACATCGCCCTGCGCATGACCCGCACGCCGCCGGAACACCTGGTCGGGCGCAACCTC 
GGCGAGGTGCGCTACGTGCTCTGCGCCAGCGAACGCTACCTGGAGGGCCGCGACGCGACGGAGCCCGCCATG 
CTGCACTGGATCGCCCCGGACGATTTCCTTCCCGACCACCCGAGCGTGGTCTGGCGTCGTCGACACTATCCC 
GGGGTATTGCCGGCCTACCGCTGCAACGGCGTGCTGGCGGTCTCCGAGATGGCCCGCGCCGGCCTCGGCCTG 
GCGGCGATCCCCGCCTACCTGCTGCGCGACGGCGACGGCCTGCGGGTACTGGACGCCGACCTCGAGGGCTGC 
GCCAGCGCCCTGTGGCTGCTGACCCGTCCGGACTGCCGGGCGTTGCGCTCGGTGGTCGCGTTGTTCGACGAG 
CTGGGGCGGCATGTGCGCTTGGGTGATGAGTGA